Gene Lcho_0248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0248 
Symbol 
ID6160536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp264964 
End bp266124 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content67% 
IMG OID641662992 
Productpyrroloquinoline quinone biosynthesis protein PqqE 
Protein accessionYP_001789288 
Protein GI171056939 
COG category[R] General function prediction only 
COG ID[COG0535] Predicted Fe-S oxidoreductases 
TIGRFAM ID[TIGR02109] coenzyme PQQ biosynthesis protein E 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00239329 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGAACA TGGCCGCGTC CGCTGTTGCC GTTCAGCCGC CCGGCCCGCC GTTGTGGCTG 
CTGGCCGAGG TGACCTACCG CTGCCCGCTG CACTGCGTCT TTTGCTACAA CCCGCTCGAC
TTCGCCGCCC AGGGCAAGGC GCAGGAGCTG CCCACCGCCG ACTGGCTGCG CGTGCTGCGC
GAGGCGCGTG CGCTGGGCGC CGTGCAGTGC GGCTTCTCGG GCGGCGAGCC GCTCGAGCGC
GACGACCTCG AGGAGATGAT CGCCGAGGCG CACCGGCTCG GTTTCTACAC CAACCTGCTG
ACCTCGGGTG TCGGCCTGAC CGCGCAGCGC GCCGCCGCGC TGAAGGCCGC CGGCCTCGAC
CACATCCAGC TCAGCTTCCA GGACTCGACC CGCGAGCTCA ACGACTTCCT GAGCCACACC
AAGACCTTCG GCCTGAAGCA GCAGGTCGGC GAGCTGATCA AGGCCAACGG CTGGCCGATG
GTGATGAACG TGGTGATCCA CCGCCTCAAC ATCGATCACA TCGACCGCAT CATCGCGATG
GCCGATGCGC TCGGTGCCGA GTACCTCGAA CTCGCCAACT CGCAGTACTA CTCGTGGGCG
CACCTGAACC GCGACCACCT GCTGCCCACG CACGATCAGT TGAAGCGCGC CGAGGCGATC
ACCGACGAGT GGCGGGTCAA GCTGGCCGAC CGCATGAAGC TGTTTTTCGT CGCTCCCGAC
TACCACGAGG GCACGCCCAA GAAGTGCATG AACGGCTGGG GCAACGTCTT CCTGACCATC
ACGCCCGACG GCACGGCCTT GCCTTGCCAC ACCGCCAAGA TGCTGCCCGG CCTGGCGTTC
CCGAACGTGC AGACGAGCTC GGTGCGCGAG ATCTGGCAGG ACAGCGAAGG CTTCAACCGC
TTTCGCGGCA CCGGCTGGAT GAAGGAGCCG TGCGTGTCGT GCCCCGACAA GGAAAAGGAC
CTCGGCGGCT GCCGCTGCCA GGCTTTCCTG CTGGCCAACG ACCCGGCCGC GGCCGACCCG
GTCTGCCCCA AAAGCCCGCA TCACGGCGTG GTCAAGGCGG CGGTCGAGGC CAGCGAAGCG
GGTGCGGTGC CGGTGCGACC GCTGGTTTTC CGCGATCCGA AAAATTCGAA GGCTTTCGTC
AGCCCGGTCG GGCAGAGCTG A
 
Protein sequence
MTNMAASAVA VQPPGPPLWL LAEVTYRCPL HCVFCYNPLD FAAQGKAQEL PTADWLRVLR 
EARALGAVQC GFSGGEPLER DDLEEMIAEA HRLGFYTNLL TSGVGLTAQR AAALKAAGLD
HIQLSFQDST RELNDFLSHT KTFGLKQQVG ELIKANGWPM VMNVVIHRLN IDHIDRIIAM
ADALGAEYLE LANSQYYSWA HLNRDHLLPT HDQLKRAEAI TDEWRVKLAD RMKLFFVAPD
YHEGTPKKCM NGWGNVFLTI TPDGTALPCH TAKMLPGLAF PNVQTSSVRE IWQDSEGFNR
FRGTGWMKEP CVSCPDKEKD LGGCRCQAFL LANDPAAADP VCPKSPHHGV VKAAVEASEA
GAVPVRPLVF RDPKNSKAFV SPVGQS