Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0248 |
Symbol | |
ID | 6160536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 264964 |
End bp | 266124 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641662992 |
Product | pyrroloquinoline quinone biosynthesis protein PqqE |
Protein accession | YP_001789288 |
Protein GI | 171056939 |
COG category | [R] General function prediction only |
COG ID | [COG0535] Predicted Fe-S oxidoreductases |
TIGRFAM ID | [TIGR02109] coenzyme PQQ biosynthesis protein E |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00239329 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGAACA TGGCCGCGTC CGCTGTTGCC GTTCAGCCGC CCGGCCCGCC GTTGTGGCTG CTGGCCGAGG TGACCTACCG CTGCCCGCTG CACTGCGTCT TTTGCTACAA CCCGCTCGAC TTCGCCGCCC AGGGCAAGGC GCAGGAGCTG CCCACCGCCG ACTGGCTGCG CGTGCTGCGC GAGGCGCGTG CGCTGGGCGC CGTGCAGTGC GGCTTCTCGG GCGGCGAGCC GCTCGAGCGC GACGACCTCG AGGAGATGAT CGCCGAGGCG CACCGGCTCG GTTTCTACAC CAACCTGCTG ACCTCGGGTG TCGGCCTGAC CGCGCAGCGC GCCGCCGCGC TGAAGGCCGC CGGCCTCGAC CACATCCAGC TCAGCTTCCA GGACTCGACC CGCGAGCTCA ACGACTTCCT GAGCCACACC AAGACCTTCG GCCTGAAGCA GCAGGTCGGC GAGCTGATCA AGGCCAACGG CTGGCCGATG GTGATGAACG TGGTGATCCA CCGCCTCAAC ATCGATCACA TCGACCGCAT CATCGCGATG GCCGATGCGC TCGGTGCCGA GTACCTCGAA CTCGCCAACT CGCAGTACTA CTCGTGGGCG CACCTGAACC GCGACCACCT GCTGCCCACG CACGATCAGT TGAAGCGCGC CGAGGCGATC ACCGACGAGT GGCGGGTCAA GCTGGCCGAC CGCATGAAGC TGTTTTTCGT CGCTCCCGAC TACCACGAGG GCACGCCCAA GAAGTGCATG AACGGCTGGG GCAACGTCTT CCTGACCATC ACGCCCGACG GCACGGCCTT GCCTTGCCAC ACCGCCAAGA TGCTGCCCGG CCTGGCGTTC CCGAACGTGC AGACGAGCTC GGTGCGCGAG ATCTGGCAGG ACAGCGAAGG CTTCAACCGC TTTCGCGGCA CCGGCTGGAT GAAGGAGCCG TGCGTGTCGT GCCCCGACAA GGAAAAGGAC CTCGGCGGCT GCCGCTGCCA GGCTTTCCTG CTGGCCAACG ACCCGGCCGC GGCCGACCCG GTCTGCCCCA AAAGCCCGCA TCACGGCGTG GTCAAGGCGG CGGTCGAGGC CAGCGAAGCG GGTGCGGTGC CGGTGCGACC GCTGGTTTTC CGCGATCCGA AAAATTCGAA GGCTTTCGTC AGCCCGGTCG GGCAGAGCTG A
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Protein sequence | MTNMAASAVA VQPPGPPLWL LAEVTYRCPL HCVFCYNPLD FAAQGKAQEL PTADWLRVLR EARALGAVQC GFSGGEPLER DDLEEMIAEA HRLGFYTNLL TSGVGLTAQR AAALKAAGLD HIQLSFQDST RELNDFLSHT KTFGLKQQVG ELIKANGWPM VMNVVIHRLN IDHIDRIIAM ADALGAEYLE LANSQYYSWA HLNRDHLLPT HDQLKRAEAI TDEWRVKLAD RMKLFFVAPD YHEGTPKKCM NGWGNVFLTI TPDGTALPCH TAKMLPGLAF PNVQTSSVRE IWQDSEGFNR FRGTGWMKEP CVSCPDKEKD LGGCRCQAFL LANDPAAADP VCPKSPHHGV VKAAVEASEA GAVPVRPLVF RDPKNSKAFV SPVGQS
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