| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0246 |
|---|
| Symbol | |
|---|
| ID | 6160534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 263895 |
|---|
| End bp | 264674 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641662990 |
|---|
| Product | pyrroloquinoline quinone biosynthesis protein PqqC |
|---|
| Protein accession | YP_001789286 |
|---|
| Protein GI | 171056937 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG5424] Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C |
|---|
| TIGRFAM ID | [TIGR02111] coenzyme PQQ biosynthesis protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00212827 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAT CCGTCGGCAA CCGTTTCGGC ACGCCCTTCA ACGCACCGGC CACCACGAGG
CCGCGTGACC CGGCCGCACC GGCCTGGGAC CACGTCGCCT TCGAGGCGCA GCTGCGCGAG
CAGGGCAAGA GCTATCACAT CCACCACCCG TTCAACGTGA TGCTGAACAC GGGCCGCGCG
ACGCCCGAGC AGATCCGCGG CTGGGTGGCG AACCGTTTCT ACTACCAGAT CGCCATTCCG
GTGAAGGACG CCGCGGTGCT GTCCAACTGC CCGGATCGCG CGGTGCGGCG CGAGTGGATC
CAGCGCATCC TCGACCACGA CGGCTTCGAG ATCGGTGGCG TCAAGGACGA AGGTGGCATC
GAGGCCTGGA TCCGGCTCGG CATCGCGGTG GGCCTGACGC GCGAGGAGAT CACCGACCTG
CGCCACGTCA TCCCGGCGGT GCGCTTTGCG GTCGACGCCT ACGTGAACTT CGCGCGCCAC
GCGCCTTGGC AGGAGGCGGT GTGCTCGTCG CTCACCGAGC TGTTCGCGCC CGAGATCCAC
AAGCAGCGCC TGGCCACCTG GCCCGAACAC TACGGCTGGA TCGAGAGCGA GGGGCTGCAG
TATTTCCGCA ACCGCGTCAG CCAGGCGCGG CGTGATGTCG AGCAGGGGCT GGCGGTCACG
CTCGGTCACT TCCAGACGCG CGATCAGCAG GAGCGCGCGC TCGAGATCCT GCGCTTCAAG
CTCGACATTC TGTGGGCGAT GAACGATGCG ATGGCGCAGC GTTACGGGGC CGACGCATGA
|
|---|
| Protein sequence | MNTSVGNRFG TPFNAPATTR PRDPAAPAWD HVAFEAQLRE QGKSYHIHHP FNVMLNTGRA
TPEQIRGWVA NRFYYQIAIP VKDAAVLSNC PDRAVRREWI QRILDHDGFE IGGVKDEGGI
EAWIRLGIAV GLTREEITDL RHVIPAVRFA VDAYVNFARH APWQEAVCSS LTELFAPEIH
KQRLATWPEH YGWIESEGLQ YFRNRVSQAR RDVEQGLAVT LGHFQTRDQQ ERALEILRFK
LDILWAMNDA MAQRYGADA
|
|---|
| |