Gene Lcho_0245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0245 
Symbol 
ID6160533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp262948 
End bp263862 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content71% 
IMG OID641662989 
Productpyrroloquinoline quinone biosynthesis protein PqqB 
Protein accessionYP_001789285 
Protein GI171056936 
COG category[R] General function prediction only 
COG ID[COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I 
TIGRFAM ID[TIGR02108] coenzyme PQQ biosynthesis protein B 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00109677 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACTGC TCGTGCTCGG TAGCGCCGCC GGTGGCGGCT TCCCGCAGTG GAACTGCCAC 
TGCGACAACT GCCGCGGCGT GCGCGCCGGC GCGCCCGGCC TGCGCGCGCG CACCCAGTCG 
TCGGTGGCGG TCGGCGGCCC GCACGACTGG GTGCTGGTCA ACGCCTCGCC CGATGTGCTG 
ACCCAGCTGC AGCGCGCGCC CGCCCTCAAC CCGGGGCGCG CGCTGCGTGA CAGCGGCATC 
GCCGGCGTGG TGCTGGTCGA CGGCCAGGTC GACCACACCA CCGGCCTCTA CATGCTGCGC 
GAAGGCCAGC GGCCGCTGCC GCTGTGGTGC ACCGACCCGG TGTTCGAGGA CCTGACGCAG 
GGCAACCCGA TCCTGGGCGT GCTGGCGCAT TTCTGCGGTG TCGGCCGGCA CCGCATCCCG 
CTCGACGGCA GTTCGTTCGA GGTCGCCGGC GTGCCGGGCC TGAAGATCAC CGCGCTGGCG 
CTGCAGAGCA AGGCCGCACC GTATTCGCCG CACCGCGAAC AGCCCGTGCC CGGCGACAAC 
GTCGGCCTGC TGTTCGAGAA CACCGCCAGC GGCGGGCGCC TGTTCTACGC GCCCGGCCTG 
GGCGCGATCG ACGCACCGGT CTGGGAGCTG ATGAACAGCG CCGACGTCGT GATGGTCGAC 
GGCACCTTCT GGACCGACGA CGAGATGATC CGCCTCGGCC TGTCGAAGAA GACCGCGCGC 
GACATCGGCC ACCTCGCGCA AAGCGGCGAG GGCGGCATGA TCGAGCAGCT CGGCCGCCTC 
AAGCCCGGCA CGCGCCGGCT GCTCATCCAC ATCAACAACA CCAACCCGAT CCTCGACGAG 
GGCTCGCCGC AACGCCGCGA GCTTGACGCG GCGGGCATCG AGGTCTGCCA CGACGGCATC 
GAGATCGAGT TCTGA
 
Protein sequence
MKLLVLGSAA GGGFPQWNCH CDNCRGVRAG APGLRARTQS SVAVGGPHDW VLVNASPDVL 
TQLQRAPALN PGRALRDSGI AGVVLVDGQV DHTTGLYMLR EGQRPLPLWC TDPVFEDLTQ 
GNPILGVLAH FCGVGRHRIP LDGSSFEVAG VPGLKITALA LQSKAAPYSP HREQPVPGDN 
VGLLFENTAS GGRLFYAPGL GAIDAPVWEL MNSADVVMVD GTFWTDDEMI RLGLSKKTAR 
DIGHLAQSGE GGMIEQLGRL KPGTRRLLIH INNTNPILDE GSPQRRELDA AGIEVCHDGI 
EIEF