Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0240 |
Symbol | |
ID | 6160522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 257542 |
End bp | 259233 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641662984 |
Product | major facilitator transporter |
Protein accession | YP_001789280 |
Protein GI | 171056931 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.000308236 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTCCGCAC ACCCGACGCC GGATCGGGCG CCCCGGACAC CGATGGCCCG GGAAGACATC CAGCTCGTCT TTGCGTCTTC CTTCGGCACG GTGTACGAGT GGTACGACTT CTACCTCTAC GGCGCGCTCG CGCCCATCAT CGCGGCGCAG TTCTTCAGCG GGCTCGATCC GTCGGCCGGC TTCATCTTCG CGCTGCTCGC CTTTGCCGCC GGCTTCATCG TGCGCCCGTT CGGCGCGCTG GTGTTCGGTC GCCTGGGCGA CATGATCGGG CGCAAGTACA CCTTCCTGAT CACCATCTTG CTGATGGGCC TGTCGACCTG CGTGGTCGGC GTGCTGCCGA GCTACGCCGA CATCGGCCTG GCCGCGCCGG TGATGCTGAT CGCGCTGCGG CTGCTGCAGG GCCTGGCGAT GGGCGGCGAG TACGGCGGCG CGGCGACCTA CGTGGCCGAA CACGCGCCGC CCGACCGGCG CGGTTTCTAC ACCTCGTGGA TCCAGACCAC CGCCTCGCTC GGCCTGTTCA TGGCGCTGGT GGTGATCCTG CTGCTGCGCC AGGTGCTCGG CGATGCCGCC TTCGCCGACT GGGGCTGGCG CATCCCGTTC CTGCTGTCGA TCGTGCTGCT GGCGGTGAGC GTGTGGGTGC GGCTGTCGAT GAACGAATCG CCGGCTTTCC AGCGCCTGCG TGAAACCGGC CGCACCTCGA AGGCGCCGAT CCGCGAGTCG TTCGGCAACT GGCGCAACCT GCGGGTCGTG CTGCTGGCGC TGTTCGGGCT GGTGGCCGGG CAGGCGGTGG TCTGGTACAC GGGCCAGTTC TACGCGCTGT TCTTCCTGAC CGGCGTGCTG CGGGTCGAGC CGTCGACCGC GCAGTGGCTG ATGGTCGCGG CGCTGGCGAT CGGCACGCCG TTCTTCGTGT TCTTCGGCGC GCTGGCGGAT CGCATCGGCC GCAAGCCGAT CATCATGGCC GGCCTGGCGC TGGCGGCGGC GGGCTACTTC CCGATGTTCG AGGCGCTGAC GGTGGCGGCC AACCCGGCGC TGGCCGAGGC GCAGGCGAAC GCGCGCATCG TGGTGGCAGC CGACCCGGCG ACCTGCTCGT TCCAGGGCAG TCCGATCGCG CGTGAGGTCG ATTTCGCCTC GCCCTGCGAT CTGGCCAAGC GCTTCCTGAC CGAACAGGGC GCCAGCTACG ACAACCGCGC GCTGCCGCGC GGCGCCGCCA CCGTGGTGCG GGTCGGCAGC ACCGAGATCA CGCCGCCGCG CGGGGGGCTC GCGGCCGGCG GCCACGGCTT CGACGACCGC AGCGTGCGCG CCATCGCGGC CTTCCGCGCC GAGGTGCGCC AGGCTCTGCT GGCGGCGGGC TACCCGGAGC GGGCCGACCC GGCGCGCATG GACAAGGTCG GCATCGTCGT GATCCTGAGC GCCTTCATGC TGCTGGTGAC GATGGTCTAC GGCCCGATCG CGGCGATGCT GGTGGAGATG TTCCCCACCC GCATCCGCTA CACCTCGATG AGCCTGCCGT ATCACATCGG CAACGGCTGG TTCGGCGGCC TGATGCCGTC GATCGCGTTC GCCATCGTCG CCCACAGCGG CAACATGTAC GACGGCCTCT GGTACCCGGT GCTGATCGCC GCCGGCTCCT GCGCGATCGG CCTGCTGCTG GTGCGCGAGA CGCGCGGGCG CGACATCTAC GCGCAGGACT GA
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Protein sequence | MSAHPTPDRA PRTPMAREDI QLVFASSFGT VYEWYDFYLY GALAPIIAAQ FFSGLDPSAG FIFALLAFAA GFIVRPFGAL VFGRLGDMIG RKYTFLITIL LMGLSTCVVG VLPSYADIGL AAPVMLIALR LLQGLAMGGE YGGAATYVAE HAPPDRRGFY TSWIQTTASL GLFMALVVIL LLRQVLGDAA FADWGWRIPF LLSIVLLAVS VWVRLSMNES PAFQRLRETG RTSKAPIRES FGNWRNLRVV LLALFGLVAG QAVVWYTGQF YALFFLTGVL RVEPSTAQWL MVAALAIGTP FFVFFGALAD RIGRKPIIMA GLALAAAGYF PMFEALTVAA NPALAEAQAN ARIVVAADPA TCSFQGSPIA REVDFASPCD LAKRFLTEQG ASYDNRALPR GAATVVRVGS TEITPPRGGL AAGGHGFDDR SVRAIAAFRA EVRQALLAAG YPERADPARM DKVGIVVILS AFMLLVTMVY GPIAAMLVEM FPTRIRYTSM SLPYHIGNGW FGGLMPSIAF AIVAHSGNMY DGLWYPVLIA AGSCAIGLLL VRETRGRDIY AQD
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