Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0239 |
Symbol | |
ID | 6160521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 256769 |
End bp | 257434 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641662983 |
Product | YbaK/prolyl-tRNA synthetase associated region |
Protein accession | YP_001789279 |
Protein GI | 171056930 |
COG category | [R] General function prediction only [S] Function unknown |
COG ID | [COG2606] Uncharacterized conserved protein [COG3313] Predicted Fe-S protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.000372034 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTCGAACC CGAATCCCGA TCCCTCCGCC GTGCTGCCCG AACGGGTGCG CGAGGTCGCC GCCTGGCTGG CCGAACGCGC GCATGCCGAT GCGCCGCGCT GGCTCGACGT CTCCGCCCGC ACCGCGCAGG AGGCCGCCGA CGCACTGGGC GTGGCGCTCG GCCAGATCGC CAAGAGCGTG ATCTTCCGGC GCCTGGCCGA CGACGTGGCG GTGCTGGTCG TGACCTCGGG CGACCGGCGG GTCGACGAGG CCAAGGTGGT GGCGCAGGTC GGCGCGATCG GCCGTGCCGA CGCGGCTTTC GTGCGCGCGC GCACCGGCTT CGTGATCGGC GGCGTGGCGC CGGTGGCGCA TCGCAACGAG CCGGTGGTGC TGCTCGACCG CGACCTCTGG CGCTTCGAGT CGATCTGGGC CGCCGCCGGC CATCCGAAGG CGGTCTTCCG GCTGGTGCCC GACGACCTGC GCCGGCTGTG CGCAGGCGCG GCGGCGCACG ACGTCACCGA GTCGGCGGCG CCGCGCAGCC CGTGCATCGA CGTGTGCAAG CTCGACCCCG TGACCCGCCT CTGCGAGGGC TGCCTGCGCA CCATCGACGA GATCGCCGGC TGGTCGGCGA TGAGCGACGA GGCCCGCCTC GAGGTGCTGC GCCAGCTGCC CGGGCGCCGC GCCTGA
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Protein sequence | MSNPNPDPSA VLPERVREVA AWLAERAHAD APRWLDVSAR TAQEAADALG VALGQIAKSV IFRRLADDVA VLVVTSGDRR VDEAKVVAQV GAIGRADAAF VRARTGFVIG GVAPVAHRNE PVVLLDRDLW RFESIWAAAG HPKAVFRLVP DDLRRLCAGA AAHDVTESAA PRSPCIDVCK LDPVTRLCEG CLRTIDEIAG WSAMSDEARL EVLRQLPGRR A
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