| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0233 |
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| Symbol | |
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| ID | 6160552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 249060 |
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| End bp | 250733 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641662977 |
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| Product | general substrate transporter |
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| Protein accession | YP_001789273 |
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| Protein GI | 171056924 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00123481 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCAGCA TCCCGATCAA TGCGACCAAG AAGGCCGTTC CGCCGGCCAT GACACCCGAA
GAGCGGAAGG TGATCTTCGC CTCCTCGCTG GGCACGGTGT TCGAGTGGTA CGACTTCTAC
CTCTACGGCT CGCTCGCAGC CATCATCGCC AAGCAGTTCT TCGCGGGACT GGATGCCGGC
TCGGCCTTCA TCTTCGCGCT GCTCGCCTTT GCCGCCGGCT TCATCGTGCG CCCGTTCGGC
GCGCTGGTGT TCGGTCGCCT GGGCGACATG ATCGGCCGCA AGTACACCTT CCTGGTGACG
ATCCTGATCA TGGGCCTGGC GACGTTCATC GTCGGCATCC TGCCCAACTA CGAGTCGATC
GGCGTGGCCG CGCCGGTGAT CCTGATCGCG CTGCGCATGC TGCAGGGCCT GGCGCTCGGC
GGTGAATACG GCGGTGCCGC CACCTACGTG GCCGAACACG CGCCGCACGG CAAGCGCGGC
GCCTACACGG CGTGGATCCA GACCACCGCG ACGCTGGGCC TGTTCCTGTC GCTGATGGTC
ATTCTCGGCA CCCGCACCGC GATCGGCGAA GCCGCCTTCG CCGACTGGGG CTGGCGCATC
CCGTTCATCG TCTCGATCGC CCTGCTGGCC ATCAGCGTGT GGATCCGCCT GTCGATGAAC
GAATCGCCCG CCTTCAAGAA GATGAAGGAA GAGGGCAAGA CCTCGAAGGC GCCGCTGTCG
GAGTCGTTCG GCCAGTGGAA GAACCTGAAG ATCGTGATCC TGGCGCTGAT CGGCCTGACC
GCCGGCCAGG CCGTTGTCTG GTACACGGGC CAGTTCTACG CGCTGTTCTT CCTGACGCAG
GCCCTCAAGG TCGACGGCGC CACCGCCAAC GTGCTGGTCG CTGCCTCGCT GGTGATCGGC
ACGCCGTTCT TCATCGTGTT CGGCGCGCTG TCCGACAAGA TCGGCCGCAA GCCCATCATC
ATGGCCGGCT GCCTGATCGC CGCGCTGACC TTCTTCCCGC TGTTCAAGGC GCTGACCCAG
GCCGCCAACC CGGACCTCGC GACGGCCCAG GCCAACGCCA AGGTCACCAT CACGGCCGAC
CCCAAGGAGT GCTCGTTCCA GTTCAACCCG ACCGGCACGA AGAAGTTCAC CAGCTCCTGC
GACATCGCCA AGCAGGTGCT GGCCGGCGCT TCGGTCAGCT ACGACAACAT CGAGGCCACC
GGCCCCGCCA AGATCACGGT GGGCACGACG GTCATCGAGG GCTACACCTC GGCCGGCCTG
GCGGCTGACG AAGCCAAGAA GAAGGACGCC GAGTTCAAGA AGGCCGTCGC CGATGCGCTC
AAGGCCGCCG GCTACCCGGC CAAGGCCGAT CCGGCCAAGG TCGACAAGCT GAAGATCATC
GTCATCCTGA CGATCCTCGT GATCTACGTG ACGATGGTCT ACGGCCCGAT CGCGGCGATG
CTGGTGGAGA TGTTCCCGAC CCGCATCCGC TACACCTCGA TGAGCCTGCC GTACCACATC
GGCAACGGCT GGTTCGGCGG CCTGCTGCCC ACCACCGCCT TCGCCATCGT GGCGCAGACC
GGCAACATGT ACAACGGCCT CTGGTATCCG ATCATCATCG CCGGCGCGAC CTTCGTCATC
GGCATGCTGT TCATCAAGGA AACCAAGGAC GTCGACATCT ACGCCGACGA CTGA
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| Protein sequence | MSSIPINATK KAVPPAMTPE ERKVIFASSL GTVFEWYDFY LYGSLAAIIA KQFFAGLDAG
SAFIFALLAF AAGFIVRPFG ALVFGRLGDM IGRKYTFLVT ILIMGLATFI VGILPNYESI
GVAAPVILIA LRMLQGLALG GEYGGAATYV AEHAPHGKRG AYTAWIQTTA TLGLFLSLMV
ILGTRTAIGE AAFADWGWRI PFIVSIALLA ISVWIRLSMN ESPAFKKMKE EGKTSKAPLS
ESFGQWKNLK IVILALIGLT AGQAVVWYTG QFYALFFLTQ ALKVDGATAN VLVAASLVIG
TPFFIVFGAL SDKIGRKPII MAGCLIAALT FFPLFKALTQ AANPDLATAQ ANAKVTITAD
PKECSFQFNP TGTKKFTSSC DIAKQVLAGA SVSYDNIEAT GPAKITVGTT VIEGYTSAGL
AADEAKKKDA EFKKAVADAL KAAGYPAKAD PAKVDKLKII VILTILVIYV TMVYGPIAAM
LVEMFPTRIR YTSMSLPYHI GNGWFGGLLP TTAFAIVAQT GNMYNGLWYP IIIAGATFVI
GMLFIKETKD VDIYADD
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