| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0228 |
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| Symbol | |
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| ID | 6162752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 242876 |
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| End bp | 243415 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641662972 |
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| Product | nuclear protein SET |
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| Protein accession | YP_001789268 |
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| Protein GI | 171056919 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2940] Proteins containing SET domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000325788 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCGACGC GCCGAGCCAG CCCTGCCCCC GAGCGCCCCG CGCGAGCCCC GAAACCCGCA
CCGGTCGCCG CGGTCGAGGC ACCGCCGCGC AAGGACCCGC GGCGCATCCA GGTGCGCCGC
TCGGGCGTGC ACGGCAAGGG CGTGTTCGCG CTGCAGCCGC TGAAGAAAGG CGAGCTGCTG
ATCGAATACA AGGGCGAGAT GATCGGCTGG GACGAGGCGC TGCGCCGCCA TCCGCACGAC
CCCGCGCAGC CCAACCACAC CTTCTACTTC CACGTCGACG AGCAGCGGGT CATCGACGGC
GCCGTCAACG GCAACGCGGC GCGCTGGATC AACCACGCCT GCGCGCCCAA CTGCGAGGCC
GAGATCGACG GCGATCGCAT CTTCATCAAG GCCCGGCGCG CCATCAAGGC CGGCGAGGAG
CTGTTCTTCG ACTACCAGCT GGTGATCGAC GAGCGCTACA CCGCCCGGCT CAAGAAGGAC
TACGCCTGCT GGTGCGGCCA CAAGACCTGC CGCGGTACGA TGCTGGCGCC CAAACGCTGA
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| Protein sequence | MPTRRASPAP ERPARAPKPA PVAAVEAPPR KDPRRIQVRR SGVHGKGVFA LQPLKKGELL
IEYKGEMIGW DEALRRHPHD PAQPNHTFYF HVDEQRVIDG AVNGNAARWI NHACAPNCEA
EIDGDRIFIK ARRAIKAGEE LFFDYQLVID ERYTARLKKD YACWCGHKTC RGTMLAPKR
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