Gene Lcho_0226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0226 
Symbol 
ID6161946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp241426 
End bp242085 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content73% 
IMG OID641662970 
Productputative signal peptide protein 
Protein accessionYP_001789266 
Protein GI171056917 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.000356049 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTGAGGG GCCTGCTGGC GGCGCTGCTC CTGGCCAATC TGATGTTCTT CAGCTGGAGC 
CGCGGCTGGC TCGACGACGT GGTCGGCCTG TCGCCGCAGC GCGACCGCGA ACCGCAGCGG 
CTGGCCGCGC AGATCGCGCC CGAGGCGCTG CAGATCCTGC CGCCCGCCAC GCTGACCCGG 
CGCGCGCCGC CGCCGGTCTG CCTGGAGGCC GGCCCTTTCA CGCCGGCCGA GCTGCCGCAG 
GCCGAAAGCG CCCTGCGCCG CGCCCTGCCC GAAGGCGGCT GGGCGCTGCT GACGCGCGAG 
CGCCCGGGCA GCTGGATGGC CTACATGGGG CGCTACAACT CCAAGGTGAC GATGCAGCGT 
CGCGCCGAAG AACTGCGCCG GCGCGAAGTC GCGTTCGAGG AAGTGCGCAA CCTGCCCGAC 
TACGAACCCG GCTTCATCTT CGGCCGCTAC AACCGCGAGG CCGACGCCCG GGAGAGCGTG 
CGCCGCCTGC AGGAGCAGAA GGTGCGCTTC GCCCGCGTGG TGCGGCTCGA GCCGCCCAGC 
ACCAGCCACG TGCTGCGCGT GCCCAAGGCC GACCCGGCGA CCCAGGAACG CCTGACCCAG 
ATCGACGACC TGCCGCAAGG CCGCAAGCTG CAGCCCTGCG GACGCGACTC ACGCCCCTGA
 
Protein sequence
MLRGLLAALL LANLMFFSWS RGWLDDVVGL SPQRDREPQR LAAQIAPEAL QILPPATLTR 
RAPPPVCLEA GPFTPAELPQ AESALRRALP EGGWALLTRE RPGSWMAYMG RYNSKVTMQR 
RAEELRRREV AFEEVRNLPD YEPGFIFGRY NREADARESV RRLQEQKVRF ARVVRLEPPS 
TSHVLRVPKA DPATQERLTQ IDDLPQGRKL QPCGRDSRP