Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0225 |
Symbol | |
ID | 6161945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 240223 |
End bp | 241437 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641662969 |
Product | hypothetical protein |
Protein accession | YP_001789265 |
Protein GI | 171056916 |
COG category | [S] Function unknown |
COG ID | [COG4924] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0010208 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGACT GGAGCTTGCC CGCCGACCTG CGCGCCCAGG TGCAGCGGCG CTGGGACAAG GGCGAGCTGC TGGCCGAGCG GGTCGCGCCG ACGCAGCTTT TCCCGCTGCG GCTGACGCTG CGGGTGCCGT CGTCGAGCGA CCTGTCCGAG CGTTTCGACG CGGTGCGCCG CTGGGTGGCC GATCTGCAGC AAGGCTCGCG CGCGGGCTAC CGGCTGGTGC TGCGCGAGGT GCGGCACCGC GTCATCGGCC AGAACAGCCT GCCGGCCGAG GCCTGGGTCG ACACGCTCGA CGATGCCCTG CAGGTCATCG GCAAGGCGCG CGAGGCGCGG GTGTTCCAGT CCGTGCTGGC CGCCACGCGC GAGCGTCAGC CGGCGCTCTT GCCGTGGCTG CAGCGCCAGC CCTTGCGCGC GCTGTCGCTG GCCGAGGTCT GGCCGCAGTT GCTCGATCTG GTGGCCTGGC TGCAGGCGCA TCCGCGCCCG GGCGTCTACC TGCGCCAGGT CGATCTGCCG GGCATCCACA GCAAGTTCAT CGAAGCGCAG CGCGGCGTGC TGGCCGAGCT GTTCGATCTG GCGCTGCCGC CCGATGCCAT CGACGCGACG GCCGGCGGCG CGGCGCAGTT TGCACGCCGC TACGGCTTTC GCGACAAGCC CTTGCGGGTG CGCCTGCGGT TTCTCGATCC GCGGCATGCC GCCTGGGTGA GCGGCACCGA CGCCGACTAC ACGCTGACGC AGCAGGCCTT CGCACGGCTG GACCCGCCGG CCGTGCGGCG GGTGTTCGTC ACCGAGAACG AGATCAACTT CCTGGCCTTC CCGCCGGTGG CCGACGGCCT GGTGGTGTTC GGCGCGGGTT ACGGCTTCGA GGCCATGTCG CAGGCCGGGT GGCTGCACCG CCGTGCGCTG CACTACTGGG GCGACATCGA CACCCACGGC TTTGCGATCC TCGATCAGCT GCGCGCGCAT TTCCCGCAGG CGCGCGCCTT GCTGATGGAC CACGACACCT TGCTGGCGCA CGAGGCGCAG TGGGTCGACG AGCCGCAGCC CACGCAACGC GATCTGCCGC ACCTGGACGA CGCCGAGCGC TGGCTCTACG ACGACCTGCG CTGGCGCCGA TTGCGGGATG CACCGGTGCG GCTGGAGCAG GAGCGCATCG GCTTCGGCCG CGTCGAGCAG GTGCTCGCGG CGCTGTCGTG CGGCGGGGTG CCGTCAGGGG CGTGA
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Protein sequence | MSDWSLPADL RAQVQRRWDK GELLAERVAP TQLFPLRLTL RVPSSSDLSE RFDAVRRWVA DLQQGSRAGY RLVLREVRHR VIGQNSLPAE AWVDTLDDAL QVIGKAREAR VFQSVLAATR ERQPALLPWL QRQPLRALSL AEVWPQLLDL VAWLQAHPRP GVYLRQVDLP GIHSKFIEAQ RGVLAELFDL ALPPDAIDAT AGGAAQFARR YGFRDKPLRV RLRFLDPRHA AWVSGTDADY TLTQQAFARL DPPAVRRVFV TENEINFLAF PPVADGLVVF GAGYGFEAMS QAGWLHRRAL HYWGDIDTHG FAILDQLRAH FPQARALLMD HDTLLAHEAQ WVDEPQPTQR DLPHLDDAER WLYDDLRWRR LRDAPVRLEQ ERIGFGRVEQ VLAALSCGGV PSGA
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