Gene Lcho_0221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0221 
Symbol 
ID6161941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp233567 
End bp234565 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content64% 
IMG OID641662965 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001789261 
Protein GI171056912 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00124782 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCATCA AGATCGGTAT CAACGGATTC GGCCGCATCG GCCGCATGGT GTTCCGCGCT 
GCGGTGCAGA ACTTCGAGGA CATCGAAGTG GTCGGCATCA ACGACCTGCT CGAGCCCGAC 
TACCTCGCCT ACATGCTGAA GTACGACAGC GTGCACGGCC GCTTCAAGGG TGACGTGGCC 
GTCGACGGCA ACACCCTGAT CGTCAACGGC AAGAAGATCC GCCTGACCGC GGTCAAGGAC 
CCGTCCGAGC TGAAGTGGGC CGAAGTCGGC GCCGACATCG TGGTCGAGGC CACCGGCCTG 
TTCCTGACCA AGGAAGCCGG CGAGAAGCAC CTGGCCGCGG GTGCGCGCAA GGTGGTGTTC 
TCGGCACCGT CGAAGGACGA CACGCCGATG TTCGTCTACG GCGTCAACGA CAAGACCTAC 
GCCGGCCAGG CGATCATCTC CAACGCCTCG TGCACCACCA ACTGCCTGGC GCCCGTCGCC 
AAGGTGCTCA ACGACAAGTG GGGCATCAAG CGCGGCCTGA TGACCACCGT GCACGCCGCC 
ACCGCGACGC AGAAGACCGT CGACGGCCCG AGCAACAAGG ACTGGCGCGG CGGCCGCGGC 
ATCCTCGAGA ACATCATCCC GTCGTCGACC GGCGCTGCCA AGGCCGTCGG CGTGGTGATC 
CCCGAGCTGA ACAAGAAGCT GACCGGCATG GCCTTCCGCG TGCCGACCTC CGACGTGTCG 
GTGGTCGACC TGACGGTCGA GCTCAACAGC GAAGCCACCT ACGCCGAGAT CTGCGCCGAA 
ATGAAGGCGC AGAGCGAAGG CGCGCTCAAG GGCGTGCTGG GCTACACCGA CGAGAAGGTG 
GTCTCGACCG ACTTCCGCGG CGAAGCCAAG ACCTCGGTGT TCGACGCCGA AGCCGGCCTG 
GCGCTGGACA AGACCTTCGT CAAGATCGTC TCCTGGTACG ACAACGAGTG GGGCTACTCG 
AACAAGGTGC TCGAGATGGT GCGTGTGATC GCCAAGTAA
 
Protein sequence
MTIKIGINGF GRIGRMVFRA AVQNFEDIEV VGINDLLEPD YLAYMLKYDS VHGRFKGDVA 
VDGNTLIVNG KKIRLTAVKD PSELKWAEVG ADIVVEATGL FLTKEAGEKH LAAGARKVVF 
SAPSKDDTPM FVYGVNDKTY AGQAIISNAS CTTNCLAPVA KVLNDKWGIK RGLMTTVHAA 
TATQKTVDGP SNKDWRGGRG ILENIIPSST GAAKAVGVVI PELNKKLTGM AFRVPTSDVS 
VVDLTVELNS EATYAEICAE MKAQSEGALK GVLGYTDEKV VSTDFRGEAK TSVFDAEAGL 
ALDKTFVKIV SWYDNEWGYS NKVLEMVRVI AK