| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0216 |
|---|
| Symbol | glyQ |
|---|
| ID | 6163480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 228042 |
|---|
| End bp | 228995 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641662960 |
|---|
| Product | glycyl-tRNA synthetase subunit alpha |
|---|
| Protein accession | YP_001789256 |
|---|
| Protein GI | 171056907 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0752] Glycyl-tRNA synthetase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00388] glycyl-tRNA synthetase, tetrameric type, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0389393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACTT TCCAGCACAT CATCCTGCGC CTGCAAGACT ACTGGGACCG CCAGGGCTGC
GCGCTGCTGC AACCCTACGA CATGGAGGTC GGCGCCGGCA CCAGCCACAC CGCGACCTTC
CTGCGCGCCC TCGGCCCCGA GCCCTGGAAG GCCGCCTACG TGCAGCCGAG TCGCCGGCCC
AAGGACGGCC GCTACGGCAA CAACCCGAAC CGCCTGCAGC ACTACTACCA GTACCAGGTG
GTGCTCAAGC CCGCGCCGGC CAACATCCTC GACCTCTACC TCGGCTCGCT CGAGGCGCTC
GGTTTCGATC TGAAGAAGAA CGACATCCGC TTCGTCGAGG ACGACTGGGA GAACCCGACG
CTGGGCGCCT GGGGTCTCGG CTGGGAGGTC TGGCTCAACG GCATGGAAGT CACCCAGTTC
ACCTACTTCC AGCAGGTCGG CGGCATCGAC TGCAAGCCAA TCACCGGCGA GATCACCTAC
GGCCTGGAGC GGCTGGCGAT GTACCTGCAG GGCGTCGAGA ACGTCTACGA CCTGCAGTAC
GCGCCGGGCC TGACCTACGG CGACGTGTTC CACCAGAACG AGGTCGAGCA GTCGACCTAC
AACTTCGAGC ACAGCAACGT CGAGTTCCTG CTGAGCGCCT TCGGTGCGCA CGAGGGCAAC
GCCCAGGAGC TGATGGCGCA GCAGCTCGCG CTGCCGGCCT ACGAGCAGGT GCTCAAGGCC
GCGCACACCT TCAACCTGCT CGACGCCCGC GGCGCGATCA GCGTGACCGA ACGTGCCGCC
TACATCGGCC GCATCCGCAA CCTGGCGCGC GCCGTCGCCG CCGCCTACCT CGACAGCCGG
GCGCGACTCG GCTTCCCGAT GGCACCGCGT GCCTGGGCCG ACGAGATCGG CGCCAAGCTG
GCCGCCGAAG CGGAAAAAGC AGCCCTCAAG AACGAAGCGA AGAAAGCGGC CTGA
|
|---|
| Protein sequence | MLTFQHIILR LQDYWDRQGC ALLQPYDMEV GAGTSHTATF LRALGPEPWK AAYVQPSRRP
KDGRYGNNPN RLQHYYQYQV VLKPAPANIL DLYLGSLEAL GFDLKKNDIR FVEDDWENPT
LGAWGLGWEV WLNGMEVTQF TYFQQVGGID CKPITGEITY GLERLAMYLQ GVENVYDLQY
APGLTYGDVF HQNEVEQSTY NFEHSNVEFL LSAFGAHEGN AQELMAQQLA LPAYEQVLKA
AHTFNLLDAR GAISVTERAA YIGRIRNLAR AVAAAYLDSR ARLGFPMAPR AWADEIGAKL
AAEAEKAALK NEAKKAA
|
|---|
| |