Gene Lcho_0211 details

Gene Information

• Locus tag: Lcho_0211
• ID: 6161303
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 221594
• End bp: 223609
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641662955
• Product: PAS/PAC sensor signal transduction histidine kinase
• Protein accession: YP_001789251
• Protein GI: 171056902
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase; [COG2202] FOG: PAS/PAC domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 0.143322
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCCATC GACAAGCCAT CGGACGCGCG AGCGTCGTGC GACGTTACGG ATCTGCTACC 
GCAGCCATCG CTGCGGTCGT CGGGCTGCGC GTGCTGCTCG CGCCGAGCCT GGGCGACCAG 
GCCCAGTTCG CCCCGGTGCT CTGTGCGGTC GTGTTCGCCG CCTGGCACGG CGGTTTCGGC 
CCGGCCCTGT TCGCGGTGCT GTTCGGGGCG CTGGCGACCC GCTACTTCGT GCTCGAGCCG 
ATCGGCAGCC TGGCGATCGA CGGGCGCGAT CAGCAGGTCG GCCTGGCGGT CTACCTGCTC 
TCCGGGCTCG GCATCGCAGC CCTCGGCGGC TCGATGCACA AGGCCGAGCG GCGTGCCAAC 
GAGGTCGCCG AGCAGCTCAA GCTCAAGGGC GCGCTGATCG AGAACGCGCT CGAGCCGGTG 
CTCGGCTGGG ACTGGGACGG CCGCATCACG TTCTGGAACC GTGCCGCGCA GCGGCTCTAC 
GGCTACAGCC GCGACGATGC GCTGGGCTGC ACCAGCCATG AACTCCTGCG AACCCGGGTC 
CACGGGCAGG GTGGGGCTTT CATGGACCGG CTGGCCGCCG ACGGCGCCTT CGAGGGCGAG 
CTGCGCCAGC GCACCCGCGA CGGCCGCGAG ATCGTCGTCG AGACCCGCAT GGTCAGGGTG 
ATGCGCGACG ACGGCTCGGC CTACGTGATC GAGGCGAACC GGGATGTCAC CGCTCGCACC 
GAGGCGCAGG CCGCGATGCA GCAGCTCAAT GCCGAGCTGG AGAGCCGGGT GCGCGAGCGC 
ACCGACGCGC TGTCGCGCAA CAACGAACTG CTGGCGGCGA GCCGGGCGCG GCTGGCCAGC 
ATCGTCGATT CGGCGATGGA CGCGATCGTC ACGCTCGACG GCCGGCAGCA GATCGTGCTG 
TTCAACGCCG CCGCCGAGCG CATGTTCGGC CTGTCGGCTG CGCAGGCGCT GGGGCAGCCG 
CTCGAGCGGC TGATCCCGCC GCGCTTTCGG GGCGGCCACC CGGCGCATGT CGACGGCTTC 
GACGCCCGGG GCGACAGCGC TGCGGTGCGG TCGATGCGCG CGACTCCGTC GGGCGGCGAA 
CTGCTGGGCC TGCGCGCCGA CGGCACCGAG TTCCCGGTCG AGGCGTCGAT CTCGCGCACC 
GATGTCAACG GCGACAAGCT GTTCACCGTG ATCCTGCGCG ACATCACCGA ACGCAGCCGG 
GCCGAGGAGG CCGCGGTGCG GCTGCGCATC GCCGAAGAAC AGGCCGTGAT CGCGCAGCGC 
GACAGTCGCA TGAAAAGCGA GTTCCTGGCG TCGATGTCGC ACGAGCTGCG CACGCCGCTG 
AACGCCATCC TCGGCTTCAC CGATCTGCTG CTGATGAAGG GGGCGGGCCC GCTGACCCCG 
GACCAGGAGA AGAAGCTGCG CCACATCCAT GCCGGCGGCA GCCGCCAGCT GTCGCTGATC 
GGCGATCTGC TCGATCTGGC ACGCATCGAG GCGGGCCGTT TCCCGGTCAG CATCGCGCAG 
GTGGTGTGCA CCGACGTCAT CCAGAAGGTC GTGCGCGGCC TGCAGCCGGC GGTCGCGTCC 
AAGGGCCTGC AACTGACGGC CGACGTTCCC GGCTCGATCG AGGCGGTCCG GAGCGACGCG 
GTGGTGCTGG CCAAGATCGT CCGGCTGCTG GCCGACAACG CGGTCAAGTT CACCGAGGCG 
GGCCGCGTGA CGCTGTCGGT GCATCAGCAT CGGGAGGGGG CGGGCGTGCT CGTCACCGGC 
ATCAGCGTGA GCGACACCGG CCCCGGCATC CGGCCCGAGG ATCAGGACAA GCTGTTTCTC 
GCCTTCATCC AGGGGGACGG CGCGAGCACC CGCCAGCACG GCGGGCTCGG CCTGGGCTTG 
CACCTGTCGA ACAAGCTGGC CGGCCTGATC GGCGCGCAGA TCGAGTTCCG CAGCGAGTTC 
GGCCAGGGCA GCGTGTTCAC GCTGCGGCTG GCGCAGGACG AGGCGGCACC GGCCTCGTCG 
CCGCTCAGTC GAACACCGGT ACCGGACCGT CCTTGA 

 

Protein sequence

MTHRQAIGRA SVVRRYGSAT AAIAAVVGLR VLLAPSLGDQ AQFAPVLCAV VFAAWHGGFG 
PALFAVLFGA LATRYFVLEP IGSLAIDGRD QQVGLAVYLL SGLGIAALGG SMHKAERRAN 
EVAEQLKLKG ALIENALEPV LGWDWDGRIT FWNRAAQRLY GYSRDDALGC TSHELLRTRV 
HGQGGAFMDR LAADGAFEGE LRQRTRDGRE IVVETRMVRV MRDDGSAYVI EANRDVTART 
EAQAAMQQLN AELESRVRER TDALSRNNEL LAASRARLAS IVDSAMDAIV TLDGRQQIVL 
FNAAAERMFG LSAAQALGQP LERLIPPRFR GGHPAHVDGF DARGDSAAVR SMRATPSGGE 
LLGLRADGTE FPVEASISRT DVNGDKLFTV ILRDITERSR AEEAAVRLRI AEEQAVIAQR 
DSRMKSEFLA SMSHELRTPL NAILGFTDLL LMKGAGPLTP DQEKKLRHIH AGGSRQLSLI 
GDLLDLARIE AGRFPVSIAQ VVCTDVIQKV VRGLQPAVAS KGLQLTADVP GSIEAVRSDA 
VVLAKIVRLL ADNAVKFTEA GRVTLSVHQH REGAGVLVTG ISVSDTGPGI RPEDQDKLFL 
AFIQGDGAST RQHGGLGLGL HLSNKLAGLI GAQIEFRSEF GQGSVFTLRL AQDEAAPASS 
PLSRTPVPDR P