Gene Lcho_0209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0209 
Symbol 
ID6161301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp219487 
End bp220488 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content71% 
IMG OID641662953 
ProductABC transporter-related protein 
Protein accessionYP_001789249 
Protein GI171056900 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.110043 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTACAC GCACCGATCT GGAACTGATC GACCTGGTCA AGGACTACGG CCAGTCGCTC 
GCCGTGGCCG GCATCAACCT GAAGATCGCC GCCGGCAGCT ACTGCTGCCT GCTCGGCCCT
TCGGGTTGCG GCAAGACCTC GACGCTGCGC ATGATTGCCG GCCACGAGGA GCCGACCGAA
GGCCAGATCG CCCTGGGCGG GCGCGAGATC ACGCACCTGA GCCCTGCCGC ACGCGGCACG
GCGATGATGT TCCAGAGCTA TGCGCTGTTC CCGCACCTGA CGGTGCTGGA GAACGTGGCG
TTCAGCGCCC GCATGAAGGG TGTGGCGCGC GCCGAGCGCG AGGCCCGCGC CCACGAGCTG
CTGCAGCTGG TGGCGATGGA CCCGTACGCG GCGCGCCTGC CCGCCGCGCT GTCGGGCGGC
CAGCAGCAGC GCGTGGCGCT GGCGCGCGCG CTGATGATGC GGCCCAAGGT GCTGCTGCTC
GACGAGCCGC TGTCGGCGCT CGATCCGTTC CTGCGCGTGA AGATGCGCGC CGAGCTCAAG
CGCTGGCATC AGAGCCTGGG CATGAGCTTC GTGCACGTCA CGCACAGCCA GGAAGAGGCG
ATGGCGCTGG CCGATCTGGT GGTGGTGATG AACCACGGCC GCATCGAGCA GGCCGGCAGC
GCGCGCGAGG TCTTCGAGCG CCCGCGCACC GAATTCGTGG CGCGCTTCAT CGGCGCGCAC
AACATCATCG ACACGCCCGC CGGCAAGGTG GCGGTGCGCT GCGACCGGCT CAATCTGGTC
GAGCCCGATG CCGGCGAAAC GGTGGTCACG GTGGCCGCGG TCGAGTACCA GGGCGCGCAG
GTGCAGGTGC ACCTGATGGC CGAGTCGGCC GCTGACGCCG AAGACGCCGA GCGCTGGACC
GCCACCCTGT CCGACGCCAG CTTCCACGCC GCGCCGATGG CGCCCGGCCA CCGGGTGGCG
ATGCGCTGGT GGGCCGCCGA CGCCCACGCG CTGGCGGCCT GA
 
Protein sequence
MSTRTDLELI DLVKDYGQSL AVAGINLKIA AGSYCCLLGP SGCGKTSTLR MIAGHEEPTE 
GQIALGGREI THLSPAARGT AMMFQSYALF PHLTVLENVA FSARMKGVAR AEREARAHEL
LQLVAMDPYA ARLPAALSGG QQQRVALARA LMMRPKVLLL DEPLSALDPF LRVKMRAELK
RWHQSLGMSF VHVTHSQEEA MALADLVVVM NHGRIEQAGS AREVFERPRT EFVARFIGAH
NIIDTPAGKV AVRCDRLNLV EPDAGETVVT VAAVEYQGAQ VQVHLMAESA ADAEDAERWT
ATLSDASFHA APMAPGHRVA MRWWAADAHA LAA