| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0202 |
|---|
| Symbol | |
|---|
| ID | 6161411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 212833 |
|---|
| End bp | 214254 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641662946 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_001789242 |
|---|
| Protein GI | 171056893 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.243944 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCC CCCATTCCCA CGACTGGCAA CCCGCGATCC GGCCACGCCC GATGCCCGCG
GCGATGCGCG AACAGCTGCA GCAGCGCTTC GGCAGCCGGC TGTCGACCGC ACAGGCGGTG
CGCGACCAGC ATGGCCGCGA CGAATCGCCC TACGACACCG CGGCGCCCGA GGCGGTGCTG
TTCTGCGAGA GCAACGAAGA CGTCGCCGCC GCGGTGGCGA TCGCGCACGA ACACGCGGTG
CCGGTGATTC CGTTCGGCGT CGGCTCGTCG CTCGAAGGCC ATCTGCTGGC GGTGCAGGGC
GGGCTGAGCC TGGACCTGTC GCGCATGAAC CGCATCCTGA GCCTCAACCC CGAGGACCTG
ACGGTGACGG TGCAGGCCGG CGTCACGCGC ATGCAGCTCA ACAACGAGAT CCGCCACAGC
GGCCTGTTCT TCCCGATCGA CCCGGGCGCC GACGCCACGC TCGGCGGCAT GAGTGCGACC
CGGGCATCAG GCACCAACGC GGTGCGCTAC GGCACCATGC GCGAGAACGT GCTGGCGCTG
ACGGTGGTCA CCGCCAGCGG CGAGCTGGTG CACACCGGCA CGCGGGCGCG CAAGTCGAGC
GCGGGTTACG ACCTGACGCG GTTGTTCGTC GGCAGCGAAG GCACGCTGGG CGTGATGACC
GAGATCACGC TCAAGCTCTA CCCGCTGCCC GAGGCGGTGC TGGCGGCGAT CTGCCATTTC
CCGAGCATCG CGGCGGCGGT CGACACCACC ATCGGCCTGA TCCAGATGGG CGTGCCGATC
GCGCGCTGCG AGCTGATCGA CGCGCGCACG GTGGGCATGG TCAACCGCCA CAACAAGCTC
GACCTGCGCG AGCAGGACAT GCTGCTGATG GAGTTCCACG GCAGCCCGGC CAGCGTGCGC
GAGCAGGCCG AGACGGTGCA GGCGCTGGCG GCAGAAAACG GCGGCGAATC CTTCGAGTGG
GCCGAGACCC CGGAAGAACG CACCCGCCTG TGGACGGCGC GCCACCACGC CTACTTCGCG
GCCGTGCAGT CGCGGCCGGG CTGCCGGGCG ATCTCGACCG ACACCTGCGT GCCGATCTCG
CGGCTGGCCG AGTGCATCGT CGACACGGTG GCCGATGTGG ACGCCTGCGG GCTGCCGTAT
TTCCTGGTCG GCCATGTCGG CGACGGCAAT TTCCACATCG GTTTCCTGAT CGATCCCGAC
TCGCCCGACG AGGGCCGGAT CGCCGAGCAG GTCAACCGGA CCCTGGTGGC GCGCGCGCTG
CAGATGGCCG GCACCTGCAC CGGCGAACAC GGCATCGGCC TGCACAAGAT GGGTTTCCTG
CTCGACGAGG CCGGGCCCGG TGCGGTGGCG CTGATGCGCC AGATCAAGCA CGCGCTCGAC
CCGAAGAACA TCATGAACCC GGGCAAGATC TTCGCCTGGT GA
|
|---|
| Protein sequence | MNAPHSHDWQ PAIRPRPMPA AMREQLQQRF GSRLSTAQAV RDQHGRDESP YDTAAPEAVL
FCESNEDVAA AVAIAHEHAV PVIPFGVGSS LEGHLLAVQG GLSLDLSRMN RILSLNPEDL
TVTVQAGVTR MQLNNEIRHS GLFFPIDPGA DATLGGMSAT RASGTNAVRY GTMRENVLAL
TVVTASGELV HTGTRARKSS AGYDLTRLFV GSEGTLGVMT EITLKLYPLP EAVLAAICHF
PSIAAAVDTT IGLIQMGVPI ARCELIDART VGMVNRHNKL DLREQDMLLM EFHGSPASVR
EQAETVQALA AENGGESFEW AETPEERTRL WTARHHAYFA AVQSRPGCRA ISTDTCVPIS
RLAECIVDTV ADVDACGLPY FLVGHVGDGN FHIGFLIDPD SPDEGRIAEQ VNRTLVARAL
QMAGTCTGEH GIGLHKMGFL LDEAGPGAVA LMRQIKHALD PKNIMNPGKI FAW
|
|---|
| |