| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0188 |
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| Symbol | |
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| ID | 6161428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 196746 |
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| End bp | 198404 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641662932 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001789228 |
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| Protein GI | 171056879 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCT TCGACTACAT CATCATCGGT GCCGGAACCG CCGGCTGCCT GCTCGCCAAT
CGCCTGAGTG CCGATCCGCA TCGGCGCGTG CTGCTGCTGG AGGCCGGCGG ACGCGACGAC
TACCACTGGA TCCACGTCCC CGTGGGCTAC CTTCACTGCA TCGGCAACCC GCGCACCGAC
TGGCTCTACC AGACCGAGGC CGATCCCGGC CTGAATGGCC GCTCCTTGCG CTATCCGCGC
GGCAAGGTGC TGGGCGGCAG TTCGAGCATC AACGGCATGA TCTACATGCG CGGCCAGTCG
CGCGACTACG ACCGCTGGGC TCAGGAGACG GGCGATGCCG GTTGGGGCTG GCAGGACTGC
CTGCCCTACT TCAAGCGGCA TGAAGACCAC TGGCGATTCG ATGCCAAACA GGCCGAACCC
GTGAGCGCCG AGTTCGCAGC CGCGCATGGC GGTGGCGGCG AGTGGCGGAT CGAACGCCAG
CGGCTGCGCT GGGACATCCT CGACGCCTTT TCGCAGGCCG CCCAGCAGGC CGGCATCCCC
GCGACCGACG ACTTCAACCG CGGCGACAAC GAGGGCGTCG GCTACTTCGA GGTCAATCAG
CGCAAGGGGT TGCGCTGGAA CACCGCCAAG GCCTTTCTGC GCCCGACCTG CTATGGCCGC
CCCAACTTCG AGATGTGGAC CGGCGTGCAG GTCAGCCGCC TGCTGCTGGA ACCGATGCCC
GACGGTCGTC AGCGCTGTGC GGGGGTCGAG GTCGTGACCC CGCACGGCAT CGAGACGGTG
CGGGCCAGCG GCGAGGTGCT GCTCAGCGCC GGCAGCATCG GCAGCGTGCA GGTGCTGCAA
CTCTCCGGCA TCGGGCCGGG CGAGCTGCTG CAGGACAAGG GTGTCACGGT GCAGCACCAC
CTGCCGGGTG TCGGCGAGAA CCTGCAGGAT CATCTGCAGA TCCGTTCGGT CTATCAGGTC
AGCGGCACCC GCACGCTCAA CACGATGGTC GACAGCTGGT GGGGCAAGGC GCGCATCGGG
CTGGAATACC TGTTGCATCG CAGCGGCCCG ATGAGCATGG CGCCCTCACA GCTCGGCGCG
TTCACGCGTT CGGTGGCCGG CCTGCCGCAC CCGAACATCG AGTACCACGT GCAACCGCTG
TCGCTCGATG CCTTCGGTCA GCCCCTGCAC CGCTTCAATG CCTTCACGGC CAGCGTCTGC
AACCTCAACC CGACCTCGCG CGGGCACGTG CGCATCCGCT CGCCACGTCA CGAAGACGCG
CCGGCGATCC TTGCCAATTA CCTGTCCACG GCGGCCGATC GACAGGTGGC GGCCGAGTCG
CTGCGCCTGA CGCGGCACAT CGTCGCCCAG CCGGCACTCG CGAAGTTCAA GCCTGAAGAA
ATCAAGCCTG GCGTGCAGTT CCAGAGCGAC GAGGACCTGG CCCGGCTCGC CGGTGACATC
GCGACCACCA TCTTTCACCC GATCGGCACC TGCCGGATGG GCCGCGATGA CGATCCGATG
TCGGTCGTCG ACAGCCGGTT GCGGGTGCGT GGCGTGAGCG GCCTGCGCGT GGTGGATGCC
AGCGTGATGC CCAGCATCAC CAGCGGCAAC ACCAACTCGC CGACCCTGAT GATTGCCGAG
CGCGCTGCCG AGTGGATCCG CGCAAGTGCG GTTGCGTGA
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| Protein sequence | MPTFDYIIIG AGTAGCLLAN RLSADPHRRV LLLEAGGRDD YHWIHVPVGY LHCIGNPRTD
WLYQTEADPG LNGRSLRYPR GKVLGGSSSI NGMIYMRGQS RDYDRWAQET GDAGWGWQDC
LPYFKRHEDH WRFDAKQAEP VSAEFAAAHG GGGEWRIERQ RLRWDILDAF SQAAQQAGIP
ATDDFNRGDN EGVGYFEVNQ RKGLRWNTAK AFLRPTCYGR PNFEMWTGVQ VSRLLLEPMP
DGRQRCAGVE VVTPHGIETV RASGEVLLSA GSIGSVQVLQ LSGIGPGELL QDKGVTVQHH
LPGVGENLQD HLQIRSVYQV SGTRTLNTMV DSWWGKARIG LEYLLHRSGP MSMAPSQLGA
FTRSVAGLPH PNIEYHVQPL SLDAFGQPLH RFNAFTASVC NLNPTSRGHV RIRSPRHEDA
PAILANYLST AADRQVAAES LRLTRHIVAQ PALAKFKPEE IKPGVQFQSD EDLARLAGDI
ATTIFHPIGT CRMGRDDDPM SVVDSRLRVR GVSGLRVVDA SVMPSITSGN TNSPTLMIAE
RAAEWIRASA VA
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