Gene Lcho_0183 details

Gene Information

• Locus tag: Lcho_0183
• ID: 6161189
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 192990
• End bp: 193601
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641662927
• Product: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
• Protein accession: YP_001789223
• Protein GI: 171056874
• COG category: [R] General function prediction only
• COG ID: [COG1778] Low specificity phosphatase (HAD superfamily)
• TIGRFAM ID: [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA; [TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCGAAC CGAACGCTGC GGCATCGATC CCGGCAGGCC GCCCCGTGCA GGCGCAATGC 
CGCTTCGACC CGGCACTGCT GCTGCAGGCG CAGGGCGTGC AGGTCGCGAT CTTCGATGTC 
GACGGCTGCC TGACCGACGG GCGCATCTAC ATCGGCGCCG ACGGCGAGGG CGTCAAGGCC 
TTCAACACGC TCGACGGCCA GGGCATCAAG CTGCTGGCCA GCGGCGGCAT CACGCCGGTG 
GTGATCACCG GCCGCGACTC GCCGGCGGTG CGGCGGCGTT GTGCCGACCT GGGGGTCGGC 
CGGGCGCTGT TCGGCGTGCA CGACAAGCTG GCCGCCGCTG CCGTGTTGCT GGCCGACATG 
GGTGCGAGCT GGCAGTCGCT CGCCGTGCTG GGCGACGACT GGCCCGACCT GCCGCTGATG 
ACGCGCTGTG CCTTTGCCTG CGCTCCGGTC AACGCTCACG TCGAGGTGCG GTCGGTGGCC 
CATCACGTCA CCGAGGCCCG TGGCGGCCAC GGTGCGGCGC GCGAGTTCTG CGACCTGCTG 
CTGATGGCGG CCGGTCGTTA CGCGGCGCTG CTCGACGGCC ACCTCGTCAC CCTCGACAGC 
GCGGCGACCT GA 

 

Protein sequence

MTEPNAAASI PAGRPVQAQC RFDPALLLQA QGVQVAIFDV DGCLTDGRIY IGADGEGVKA 
FNTLDGQGIK LLASGGITPV VITGRDSPAV RRRCADLGVG RALFGVHDKL AAAAVLLADM 
GASWQSLAVL GDDWPDLPLM TRCAFACAPV NAHVEVRSVA HHVTEARGGH GAAREFCDLL 
LMAAGRYAAL LDGHLVTLDS AAT