| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0176 |
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| Symbol | |
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| ID | 6160757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 182985 |
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| End bp | 185315 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641662920 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001789216 |
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| Protein GI | 171056867 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCGA CACCTTCCTG GCTGCCGGCC ACCCGACGCG GCTGGATCCT GTCTGGCCTC
GCGCTGGGCC TGGCCGTGCT CGGCCTGATC GTGGCGGTGT TCTACGTGCA GTTGCCGTCG
CTCGACAAGG TGATCGACTA CCAGCCGCGC CAGCCGCTGC AGGTCTACAC GCACGACGGC
GTGTCGATCG CCCGCTTCGG CGCCGAGCGG CGCGAGTTCG TGCCGATCGA GCAGATCCCC
GCGCGCATGC AGGAGGCCGT GCTGGCGGTC GAGGACAGCC GCTTTCGCGA GCACGGCGGC
ATCGACCTGC GCGGTCTGGC GCGGGCGGTG CTGTCCAACC TCAGCGGCGG CATGCGCCAG
GGCGCGTCGA CCATCACCCA GCAGGTCGCG CGCACCTTCT TCCTGTCGAC CCGGCGCACG
CTCGAGCGCA AGGTGAAGGA GGCGCTGCTG GCGCTCAAGC TCGAACAGCT GCTCGGCAAG
GACCAGATTC TCGAGCTGTA CATGAACCAG ATCTACCTGG GCCAGCGCAG CTACGGCTTT
GCCGCGGCGT CGCAGACCTA CTTCGGCAAG CCGCTGCAGG CGCTGTCGAT CGCCGAGACC
GCGATGCTGG CGGGGCTGCC GCAGAACCCG GTCTACGCCA ACCCGGTCAG CAACCCGGAG
CGCGCCCGCC AGCGCCAGGC CATCGTGCTG CAGCGCATGG TGGCGGTCGG CCTGATCAGC
GAGGCCGAGG CCGTCGCGGC CCGGGCCGAG AAGGTGCAGG TCCGCTCGCC GCTGGACGTC
GACGTGCATG CCGAACACGT GGCCGAGATG GCGCGCCAGA TCGTCGTCGA GCGCCACGGC
GAGCAGGCCT ACACGCAGGG CTACAAGGTG ATCACCTCCT TGCGCGCGGC CGAGCAGCAG
GCGGCCTGGC AGGCGCTGCG CCGCAGCGTG ATCGAGCACG ATCGCCGCCA GTCCTACCGC
GGCCCCGAGG ACCACGAAGA CCTGCCCGAC GATGCCGCCG AGGCCGAGGC CGCCATCACC
CGCGCCTTGA AGGAGCACCG CGATGACGAA GACCTGCGGC TGGCGCTGGT CGTGCAGGCC
GGCGCCAAGG AGGTGACGGC CCAGCTGGCC AGCGGCGAGA CCGTTCGCCT GGCTGGCGAA
GCCTTGCGCT GGGGCCAGGC GGCGCTGTCG CCCAAGGCGA AGCCGGCGCT GGCGATCCGC
CGCGGTTCGG TGATCCGGGT GCAGGCGACG TCGCGGCGCA AGGGCGCGCC GGCCTGGACG
CTGGCGCAGT GGCCCGAGGC CGAGGCCGCC TTCGTCGCGC TCGATCCGCA GACCGGCCGG
GTGCGTGCGC TGGTCGGCGG CTTCGACTTT GCGCGACGCC AGTTCAACCA CGTCACCCAG
GCCTGGCGCC AGCCGGGGTC GAGCTTCAAG CCGTTTCTCT ATTCGGCCGC GCTCGAACAC
GGCGTGATGC CCGACACGCG TGTCAACGAT GCCCCGCTCG ATCAGGCCGG CGACCTGCCG
TCGGGCTGGG ACCCGCAGAA CTCGGACGGC CAGTACGACG GTCCGATCAC GCTGCGCCAG
GGCCTGGCCC GTTCGAAGAA CCTGGTGAGC ATCCGGGTGC TGCAGCACGT CGGCGTCGGC
CCTGCGCGCG ACTGGGCCGC GCGTTTCGGC TTCGACCCGG CCCGCCAGCC CGACAACCTC
AGCCTGGCGC TGGGCGCGGG CAGCACCACG CCGATGCAGC TGGCGCAGGC CTACGCGGTG
CTGGCCAACG GCGGCTGGCG CATCGAGCCG GTACTGGTCG AGCGCATCAC CGATGCGCAG
GGGCAGGTGC TCTACGAAGC GCCGGCCCCG GCGGCGCTGG TCGAGGAACG ACGCGCCGTG
CCGGCGCGCA ATGTCTTCGT CACCAGCAGC CTGCTGCAGG AAGTGACCCG CTCGGGCACC
GCCGCCCGCG CCCAGCAGCA GCTGCAGCGG CCCGACCTCT ACGGCAAGAC CGGCACCACC
AACGATGCGG TCGACGCCTG GTTCGCCGGC TTCCAGCCCG GCGTGGTGGG CGTGGCCTGG
ATGGGCTACG ACACGCCGCG CAGCCTGGGC CAGCGCGAAT CCGGCGGCGG ACTGGCGCTG
CCGATCTGGA TCGGCTACAT GCGCGAGGCG CTGAAAGGCG TGCCGGTGGC CGAGCCGGGC
GCGCCCGACG GCGTGACGTG GACCGGCGAC GACTGGCGCT ACGGCGAATG GGCCGACGGC
GGCCAGGTCG AGGGCATCGG CCTGCCGCAA GGCGTGATCG AGCAGGTGAC CGAGCCGATC
CGGGACTGGT TCAAGGAGCT GTTCGCGCGG CCCCGGGCGT CCGGCCCCTG A
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| Protein sequence | MTSTPSWLPA TRRGWILSGL ALGLAVLGLI VAVFYVQLPS LDKVIDYQPR QPLQVYTHDG
VSIARFGAER REFVPIEQIP ARMQEAVLAV EDSRFREHGG IDLRGLARAV LSNLSGGMRQ
GASTITQQVA RTFFLSTRRT LERKVKEALL ALKLEQLLGK DQILELYMNQ IYLGQRSYGF
AAASQTYFGK PLQALSIAET AMLAGLPQNP VYANPVSNPE RARQRQAIVL QRMVAVGLIS
EAEAVAARAE KVQVRSPLDV DVHAEHVAEM ARQIVVERHG EQAYTQGYKV ITSLRAAEQQ
AAWQALRRSV IEHDRRQSYR GPEDHEDLPD DAAEAEAAIT RALKEHRDDE DLRLALVVQA
GAKEVTAQLA SGETVRLAGE ALRWGQAALS PKAKPALAIR RGSVIRVQAT SRRKGAPAWT
LAQWPEAEAA FVALDPQTGR VRALVGGFDF ARRQFNHVTQ AWRQPGSSFK PFLYSAALEH
GVMPDTRVND APLDQAGDLP SGWDPQNSDG QYDGPITLRQ GLARSKNLVS IRVLQHVGVG
PARDWAARFG FDPARQPDNL SLALGAGSTT PMQLAQAYAV LANGGWRIEP VLVERITDAQ
GQVLYEAPAP AALVEERRAV PARNVFVTSS LLQEVTRSGT AARAQQQLQR PDLYGKTGTT
NDAVDAWFAG FQPGVVGVAW MGYDTPRSLG QRESGGGLAL PIWIGYMREA LKGVPVAEPG
APDGVTWTGD DWRYGEWADG GQVEGIGLPQ GVIEQVTEPI RDWFKELFAR PRASGP
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