Gene Lcho_0164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0164 
Symbol 
ID6160408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp171449 
End bp172054 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content72% 
IMG OID641662908 
Producthypothetical protein 
Protein accessionYP_001789204 
Protein GI171056855 
COG category[S] Function unknown 
COG ID[COG3758] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACGC CGCGTCGTGG CCAGGGCTGG CGACGCTTTG CGCTGGACCA TCTGCAGCCC 
GAACCCTGGC GCAACGGCGC CGGCCAGACC CGCCCGGTCG CCAGCCGCCA GGATGGCGCG 
GGCATCGTCT GGCGCGTCAG CGTGGCCGAG ATCGAAGCCG CCGGGCCGTT TTCCCGCTTC 
GAGGGCATCG ATCGCACGGC CGTGATGGTC GAGGGCACTG ACCTGCGCCT GGTCGCGCCG 
CAACGCCAAC TCACCTTTGA CGGCCCCGGC AGCCAGGTCC ACTTTCCCGG CGAACAGGAC 
TGGCACTGCG AGGCGCCGGC CTCGCCGACC CGGCTCTGGA ACGTGATGGT GCGACGCGGT 
GCGGCCTGCG CCGTGGTGCG CAGCGTCGAG GATCAGGTGG TGCTGGTGCC CGAAGGCCAG 
GCGGCCGCGC AGGTGGCCGA CTGGCTCGTG CTGGTCGTGC GGGGCGCGTT CGAGCTGGCC 
GGCCCGGACG GGCAGTCCGG GCACCTGGTC GGTGGGGACG GCCTGCATCT GCGCACACCC 
GCAGCCTTTT TGCGCCTGAC GCCGTGCCAG CCCGGCAGCC TGCTGGTCAT CACCGCGCTC 
TTCTGA
 
Protein sequence
MTTPRRGQGW RRFALDHLQP EPWRNGAGQT RPVASRQDGA GIVWRVSVAE IEAAGPFSRF 
EGIDRTAVMV EGTDLRLVAP QRQLTFDGPG SQVHFPGEQD WHCEAPASPT RLWNVMVRRG 
AACAVVRSVE DQVVLVPEGQ AAAQVADWLV LVVRGAFELA GPDGQSGHLV GGDGLHLRTP 
AAFLRLTPCQ PGSLLVITAL F