| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0141 |
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| Symbol | |
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| ID | 6162942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 144947 |
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| End bp | 146185 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641662885 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001789181 |
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| Protein GI | 171056832 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCACTTC CCACAAGAAT CATCGCCTGC GGCGTGCTCG CAGGCGTGCT GCTCGGCGCC
CAACTCGCCG CGGCACAAAC ACCGGCGCCA CAGCCGGCCA CCACACTGGC CGATGCAGTG
CGCGCTGCAT GGCGCCGCAG CGTCCATGCC ACCGAGGTCG CCGGCCAGCA ACGCCGCGCC
CAGGCCGAGC GGACCGCCGC ATCGGCACCC TGGGCCGAAC CCCCTTCGGT GGAGCTGGAT
TACCGGACCG ACCGGCTTCA AACCGACGCC GGCTCGCGTG AAACCGAGCT CGGCGTGGCC
ATTCCGCTCT GGTTGCCCGG GCAACGCGCG GCTCGCCGGG CATCGGCCGA GGCCGAAGAA
TCGGCTGCCA ACGCGGCGCA AGCGGCAGGC GAACTGCAAG CCGCGGCCCT GGTGCGCGAG
GCGGCCTGGG GCCTCACCCG CCAGCAGGCC GAGGTCGATC TCGCGGCGCA GCAGGTGCAG
GTGCTGGACG CCCTGGCCAG CGATGTCGAG CGGCGGGTCG CCGCGGGCGA TCTGGCCCGG
GTCGACGCAT TGGCCGCCCG GGCCGAACTG CTGGCCGCCA CCGCCGGCCT GAGTCAGGCC
CGACAGGCGC TGCACGCCGC CGTGATCCAG TGGTCTGCGC TGACCGGCTA CGCCAGCGCG
CCGGAAGACC TGCAAGCCGA GCAAGCACCC GCGGACGCGA CGCTCGGCGA CGCGCACCCG
GCCCTGCGCG CCGCCCGCCT CGGCATCGAG CTGGGCCGCA AGCGTCTGGA TGCCGTGCAG
GCCTCGTCGC GCAGCGCGCC GGAGTTCGTC GCCCGACTGC GTCAGGACCG GTCCGCACGC
GGTGAACCCG CCGCGAACAG CATCGGCGTC GGCCTGCGCA TCCCCTTGGG CACCGATGAC
CGCAATGCCC CGCTGCAGGC CGCCGCGCTC AACGAACTGG CGGCAGCACA GGCCACCGAG
CAGCAATTGA AGGTGCAGCT CCAGGCCGAG GTCGACCAGG CCCGCGCCGC GGCCCTGGCC
GCCGAGCAGC AATTGGCCCA CGAATCGGAG CGCTCGAAGC TGATGCGCGA GCGGGCCTCG
CTCATCGAGC GCTCGTTCCG GGCCGGCGAA ACGCCGCTGC CTGAATTGCT GCGGGCCTTG
TCGGACGCCG CCCGGGCCGA AGCGGACCTG CATCGCCAAT CTGCCGCGCT GGGCCTGGCC
CGCGCCCGCC TCCAACAAGC TCTCGGAATC CTGCCATGA
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| Protein sequence | MSLPTRIIAC GVLAGVLLGA QLAAAQTPAP QPATTLADAV RAAWRRSVHA TEVAGQQRRA
QAERTAASAP WAEPPSVELD YRTDRLQTDA GSRETELGVA IPLWLPGQRA ARRASAEAEE
SAANAAQAAG ELQAAALVRE AAWGLTRQQA EVDLAAQQVQ VLDALASDVE RRVAAGDLAR
VDALAARAEL LAATAGLSQA RQALHAAVIQ WSALTGYASA PEDLQAEQAP ADATLGDAHP
ALRAARLGIE LGRKRLDAVQ ASSRSAPEFV ARLRQDRSAR GEPAANSIGV GLRIPLGTDD
RNAPLQAAAL NELAAAQATE QQLKVQLQAE VDQARAAALA AEQQLAHESE RSKLMRERAS
LIERSFRAGE TPLPELLRAL SDAARAEADL HRQSAALGLA RARLQQALGI LP
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