| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0138 |
|---|
| Symbol | |
|---|
| ID | 6162939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 141654 |
|---|
| End bp | 142958 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641662882 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001789178 |
|---|
| Protein GI | 171056829 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCA AGGCATCCCT GGCACTGGCG TTCGGCCTGA TGGCCGGCAT GGCGCATGCC
GCCACCGAAC TCGTGATCGC GACCGTCAAC AACGGCCACA TGATCGAGAT GCAGAAGCTC
GGCAAGAACT TCGAGGCCGC CAATCCGGAC ATCAAGCTCA AGTGGGTGAC GCTCGAAGAA
GGCGTGCTGC GCCAGCGCGT GACGACCGAC ATCGCCACCA AGGGCGGCCA GTTCGACGTG
ATGACGATCG GCATGTACGA AACCCCGATC TGGGGCAAGA AGGGCTGGCT GCAGGAGCTC
AAGACCGACG CCAAGTACGA CGCCGACGAC ATCCTGCCGG CCATGCGCAA CGGCCTGAGC
GTCGACGGCA AGATGTACGC CGCGCCGTTC TACGGCGAGA GCTCGATGCT GATGTACCGC
AAGGACCTGG CCGACAAGGT CGGCGTGACC ATCCCCGACC GTCCGACCTG GGCGCAGGTG
AAGGACCTGG CCGCCAAGAT CCACGACCCG AAGAACGGCG TGTACGGCAT CTGCCTGCGC
GGCAAGCCGG GCTGGGGCGA CAACATGGCC TTCCTGTCGA CGCTGGTCAA CACCCACGGC
GGCCAGTGGT TCGACATGGG CTGGAAGCCG CAGCTCGAGA GCAAGCCCTG GAAGGACGCG
ATCACCTATT ACGTCGACCT GCTGAAGAAC TACGGCCCCC CGGGCTCGTC GGCCAACAGC
TTCAACGAGA TCCTGGCGCT GTACAACGAA GGCAAGTGCG GCATGTGGAT CGACGCCACG
ATCGCGGCTT CGTTCATCAG CGATCCGAAG CAGTCGAAGG TGGCCGACAA GGTGGCGTTT
GCACAGGCGC CGACGATGGT CACGCCCAAG GGCGCGAACT GGCTGTGGGC CTGGGCCCTG
GCCGTGCCGT CGGGCTCGAA GAAGGTCGAC GCGGCGCAGA AGTTCGTCAG CTGGGCGACC
TCGAAGGAGT ACATCGAGCT GGTCGCCAAG ACCAACGGCT GGGCTGCCGT GCCGACCGGC
ACGCGCAAGA GCACCTACGC CTCGGCCGAG TTCCAGAAGG CCGCCAGGTT CGCCGCCGCC
GAGAAGATGG CGATCGACAG CGCCAACCCG AACGACAGCA CGCTGCCCAA GAGCCCGTAC
GTGGGCGTGC AGTTCGCGGC CATCCCCGAG TTCCAGGCCA TCGGCATCGC GGTGGGCCAG
CAGATGAGCT CGGCACTGGC CGGCAAGACC ACGGTGGATG CGGCACTGAA GGCCAGCCAG
GTGGCTGCCG AACGTGAGAT GAAGAAGGCC GGCTACTACA AGTGA
|
|---|
| Protein sequence | MKLKASLALA FGLMAGMAHA ATELVIATVN NGHMIEMQKL GKNFEAANPD IKLKWVTLEE
GVLRQRVTTD IATKGGQFDV MTIGMYETPI WGKKGWLQEL KTDAKYDADD ILPAMRNGLS
VDGKMYAAPF YGESSMLMYR KDLADKVGVT IPDRPTWAQV KDLAAKIHDP KNGVYGICLR
GKPGWGDNMA FLSTLVNTHG GQWFDMGWKP QLESKPWKDA ITYYVDLLKN YGPPGSSANS
FNEILALYNE GKCGMWIDAT IAASFISDPK QSKVADKVAF AQAPTMVTPK GANWLWAWAL
AVPSGSKKVD AAQKFVSWAT SKEYIELVAK TNGWAAVPTG TRKSTYASAE FQKAARFAAA
EKMAIDSANP NDSTLPKSPY VGVQFAAIPE FQAIGIAVGQ QMSSALAGKT TVDAALKASQ
VAAEREMKKA GYYK
|
|---|
| |