| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0134 |
|---|
| Symbol | |
|---|
| ID | 6161262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 137319 |
|---|
| End bp | 138716 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641662878 |
|---|
| Product | mannitol dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001789174 |
|---|
| Protein GI | 171056825 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0246] Mannitol-1-phosphate/altronate dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.226672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTC CACAACCTTT CGTCATGCTC CACCTGGGGC TCGGATCGTT CCACCGTGCG
CACCAGGCGG TCTACCTGCA CGAGCTGCAG CAGACCGGCG ACACGAGCTG GGTGCTGGCC
GGTGGCAACA CCCGCCCCGA CATGGCCGAC ACGATCGCCG CCCTGCAGTC CCAGGGCGGG
GCCTACACGC TCGAGACCGT GACGCCGCAA GGCCAGCGCA CCTACACCCG CATCCGCTCG
ATCCGGCAGG TGGTGAGCTA CACCCCCGAT CTGGCCGGGC TGATCGCGCT GGGCGCCGAT
CCGGCCACCC GCATCATCTC GTTCACGGTC ACCGAGGCGG GTTATTACCT CGACGCGAAG
AACCGGCTCG ACCTCGGTTT CGCCGACCTT GCGGGCGACC TCGAGGCCGC CCGCAAGGGC
AAGCCCGGCG GCACGATCTA CGGCGCGCTG ACGGCCATCC TGCGCGCGCG CATGCTCGCC
GGCGCCGGCC CGGTGACGCT GCTCAACTGC GACAACCTGC GCCACAACGG CGAACGCTCG
CGTTCGGGCC TGCTGCAGTT CATCGAGCTG ACCAGCCAGA CCGGCCTGCT CGACTGGGTC
AAGGCCCACA CCACCAGCCC GAACGCGATG GTCGACCGCA TCACGCCGCG CCCGACCCCG
GCCGTGCGCG AGCGCGTGCT CGCCGCCACC GGCGTCGACG ACGCGGCCGC GCTGATGGGC
GAGAGCTTCA TCCAGTGGGT GATCGAGGAC GACTTCATCG CCGGCCGTCC GGCCTTCGAG
CGGGTCGGCG TCGAGATGGT GAAGTCGGTG CAGGCCTACG AAGAAGCCAA GATCCGCCTG
CTCAATGCCA CCCACAGCTG CATCGCCTGG GCCGGCACGC TGGTGGGCTA CACCTACATC
CACGAGGGCA CGCTCGATCC GGTGATCCGC CAGATGGCCT ACGACTACGT CACCGACGAC
GTGATCCCGG TGCTGTCGCC CTCGCCGCTC GACCTGGCGG CCTACCGCGA CGTGGTGCTC
GACCGCTTCG GCAACCCGGC CATCGCCGAC ACCAACCAGC GCGTGGCGAT GGACGGCTTC
AGCAAGATCC CCGGCTTCAT CGCGCCGACC TTGCGCGAGC GGCTGGCGCG CAATGAATCC
ATCGACAGCG TCGCCATGCT GCCGGCGCTG TTCCTGGCCT ACCTGCAGCG CTGGCACCGC
GGCGAGATCG CCTACACCTA CCAGGACCAG GCGATGGACC CGGCGGTGGC GCACGCCATC
TGCGAGGCCG CCGACCCGGT GGCGGCGTTC TGCGCCGACG CGCCGCTGTG GGGCAACCTG
GCCGGCGACG CTCGCCTGGT CACGGCCGTG CGCGCGGCCG CCGAGCGCGT GGCGCGTTTC
GTGGCGGAGC ACCGGTGA
|
|---|
| Protein sequence | MSSPQPFVML HLGLGSFHRA HQAVYLHELQ QTGDTSWVLA GGNTRPDMAD TIAALQSQGG
AYTLETVTPQ GQRTYTRIRS IRQVVSYTPD LAGLIALGAD PATRIISFTV TEAGYYLDAK
NRLDLGFADL AGDLEAARKG KPGGTIYGAL TAILRARMLA GAGPVTLLNC DNLRHNGERS
RSGLLQFIEL TSQTGLLDWV KAHTTSPNAM VDRITPRPTP AVRERVLAAT GVDDAAALMG
ESFIQWVIED DFIAGRPAFE RVGVEMVKSV QAYEEAKIRL LNATHSCIAW AGTLVGYTYI
HEGTLDPVIR QMAYDYVTDD VIPVLSPSPL DLAAYRDVVL DRFGNPAIAD TNQRVAMDGF
SKIPGFIAPT LRERLARNES IDSVAMLPAL FLAYLQRWHR GEIAYTYQDQ AMDPAVAHAI
CEAADPVAAF CADAPLWGNL AGDARLVTAV RAAAERVARF VAEHR
|
|---|
| |