| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0131 |
|---|
| Symbol | |
|---|
| ID | 6161259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 133836 |
|---|
| End bp | 134774 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641662875 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001789171 |
|---|
| Protein GI | 171056822 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.144823 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGTCCG AGGCGGCCCC GCTCGGCGAT ACCAGCATCG CCTTCCTGCA GCACCTGCAG
GTGCAGCGCC GGCTCGCGCC GCGCACGCTG ACGATGTATG GCGCCGCGCT GCTGCGCCTC
GAACACGCCG CGGCCGAGCA GCAGCTCGCG CTCACCCAGG TGCGCCCGCC GCACGTGCGG
CGCTGGGCCG CGATGCTGCA CGGCCAGGGG CTGGGCCCGC GCAGCATCGC CATCCACCTG
GCGGCCTGGC GCGGGCTCTA CCGCTGGCTC GGCCGCGAGG GGCAGGTCAG CGCCAACCCG
GTCGACGGCC TGCGTCCGCC CAAGGCCGGC CGGCCGCTGC CGAAGGCGCT GGCGGTCGAC
GAGGCCGTCG TGCTGGCCGA TCACCACGAC CCGGCCACCG ACCCGCTGCT CGACCTGCGT
GACCACGCCA TGACCGAGCT GCTGTACGGC TGCGGCCTGC GCGCGGCCGA ACTGATCGGC
CTGGACTGCA TCGCCGGGCC CGACGCCGCC GGCTGGATCG ACCTGGAGGG TGGCGACGCC
CAGGTGCTCG GCAAGGGCAG CAACCGCCGC ATCGTGCCGG TCGGCCCGCC GGCTGTGGCC
GCCGTGCAGG CCTGGCTGGC GGTGCGCCAT CAGATGGCCA GGGCCGGTGA GCTGGCCCTG
TTCGTCAGCC GCCGTGGCAC CCGGCTGACC GATTCGCAGC TGCGCCGGCG CCTGGCGCAA
CGCGCGCAAA GCGCCGGCCT GACCAGCCAC GTGCACCCGC ACATGCTGCG CCACAGCTAC
GCCAGTCACC TGCTGCAATC GAGCGGCGAC CTGCGCGCCG TGCAGGAGCT GCTCGGCCAC
GCCCAGATCA GCACCACGCA GGTCTACACC CGGCTCGACT ACCAGCACCT GGCTCGCATC
TACGACGCCG CGCATCCGCG TGCCAGGCGC AAGCCTTGA
|
|---|
| Protein sequence | MTSEAAPLGD TSIAFLQHLQ VQRRLAPRTL TMYGAALLRL EHAAAEQQLA LTQVRPPHVR
RWAAMLHGQG LGPRSIAIHL AAWRGLYRWL GREGQVSANP VDGLRPPKAG RPLPKALAVD
EAVVLADHHD PATDPLLDLR DHAMTELLYG CGLRAAELIG LDCIAGPDAA GWIDLEGGDA
QVLGKGSNRR IVPVGPPAVA AVQAWLAVRH QMARAGELAL FVSRRGTRLT DSQLRRRLAQ
RAQSAGLTSH VHPHMLRHSY ASHLLQSSGD LRAVQELLGH AQISTTQVYT RLDYQHLARI
YDAAHPRARR KP
|
|---|
| |