Gene Lcho_0130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0130 
Symbol 
ID6162711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp133159 
End bp133839 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content71% 
IMG OID641662874 
Producthypothetical protein 
Protein accessionYP_001789170 
Protein GI171056821 
COG category[S] Function unknown 
COG ID[COG3159] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.0920825 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATTC AAGGCATCAC CGAAGGCGAC ATCGCCAACT ACCTGGCCAA CACGCCGGGC 
TTCTTCGAGC GCCACGCGCA GCTGCTGGCC AGCGTCGAGC TGGCCAATCC GCACGGCCAG 
CGCGCGGTCT CGCTGCAGCA GCGCCAGATG GAGATGCTGC GCGAGCGCAT CCGCGGGCTC 
GAGCGCCGCA TCATGGACAT GATCCGCCAC GGCCAGGAAA ACGCCGCGCT GACCGACCGC 
CTGCACCAGT GGACCCGCGC GCTGATGCTG GTCGAAGACG CCCGCGACCT GCCCGACATG 
CTGGTGCTCG ACCTGCAGGA GCAGTTCCAG ATCCCGCAGG CCGCGCTGCG CCTGTGGGAC 
CTGGCGCCGG CCTTTGCGGG CGCCGCCTTC GCCAGCGACG TCAGCGACGA GGTGCGCAGC 
TTCACCGCCG GCCTGTCGAC GCCCTATTGC GGCGCCAACG CGGCCTTCGA GCCGGTGCAC 
TGGCTCGAGG CGCCGCAGAC CGTGGCGTCG CTGGCCCTGA TCCCGATCCG CCGCCTCGCC 
AGCAGCCCGG CCTTCGGCCT GCTGGTGCTG GCCTCGCCCG ACCCGACCCG CTACAGCGCC 
GAGATGGGCA CCGAGTTCCT GGTGCGCCTG GGCGAGATCG CCAGCGCCGC TCTCGCACGC 
CTGCTGCCAC GCGACGAGTG A
 
Protein sequence
MTIQGITEGD IANYLANTPG FFERHAQLLA SVELANPHGQ RAVSLQQRQM EMLRERIRGL 
ERRIMDMIRH GQENAALTDR LHQWTRALML VEDARDLPDM LVLDLQEQFQ IPQAALRLWD 
LAPAFAGAAF ASDVSDEVRS FTAGLSTPYC GANAAFEPVH WLEAPQTVAS LALIPIRRLA 
SSPAFGLLVL ASPDPTRYSA EMGTEFLVRL GEIASAALAR LLPRDE