| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0118 |
|---|
| Symbol | |
|---|
| ID | 6161887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 121159 |
|---|
| End bp | 122067 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641662862 |
|---|
| Product | ribosomal RNA methyltransferase RrmJ/FtsJ |
|---|
| Protein accession | YP_001789158 |
|---|
| Protein GI | 171056809 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1189] Predicted rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00478] hemolysin TlyA family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0891926 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCCG AGGACGCCGC AGCGCGGCGT CCGCCCCCTC CCGAGGGGGA TCAAGTCGAC
CCGGCCACGG CCCGCATCGA CTTGATCCCG CTCGAAGCCG CCGTCGTGCG GCGCCCTGAT
TCCCTACCCG CCATGCGCAT CGACCAGTTG ATTCTTCACA AGGGCCTCGC CCCCACGCGC
TCCGCCGCCC AGCGGTTGAT CGAACGCAAG GCGGTGCGCT GGCTCGGCCC CAAGGGCTGG
ACGGTGCCGA GCAAGGCCGG CGAAGACGTG CCCGACGAGG CGCAGGTCGA GATCACCGAC
GCCTCCGAGC TGCGCTTCGT CTCGCGCGGC GGGCTCAAGC TCGAAGGCGC GATCGCCAAG
TGCGGTTTCG ACGTGCGCGG GCGCACCTGC CTCGATGTCG GCCAGAGCAC CGGCGGCTTC
ACCGACCTGC TGCTCGACAA GGGCGCCGTC AAGGTGGTCG GCCTCGACGT CGGCCGCGAC
CAGCTCGCCG CCAAGCTGCG CGGCGACGAG CGGGTGGTCT GCTACGAGGG CATCAACGCC
CGCGACGTGG CCGGCAGCGC GTTCGCCGCC GAGTGGCCCG AAGCCAGCTT CGGCTTCATC
ACCGCCGACG TCTCGTTCAT CTCGCTGACG CACGTGCTGC CGACGCTGTT CAGCTACCTC
GCGCCCGGTG GCGACCTGCT GGCGCTGGTC AAGCCGCAGT TCGAGCTGCA GCCCGCGCAG
ATCGGCAAGG GCGGCATCGT GCGCAACAAG GCGTATTTCC AGGACGTCGA GACCCGCGTG
CGCCAGTGCT GCCGCGACTG GCCGATGAAG GTGCACGCCT ACTTCCAGAG CCCGATCGAG
GGCGGCAACG GCAACACCGA ATTCTTCATC TGGGTGCGCC ACCCCGAGCC TGCGACCCCT
GCGGCCTGA
|
|---|
| Protein sequence | MAPEDAAARR PPPPEGDQVD PATARIDLIP LEAAVVRRPD SLPAMRIDQL ILHKGLAPTR
SAAQRLIERK AVRWLGPKGW TVPSKAGEDV PDEAQVEITD ASELRFVSRG GLKLEGAIAK
CGFDVRGRTC LDVGQSTGGF TDLLLDKGAV KVVGLDVGRD QLAAKLRGDE RVVCYEGINA
RDVAGSAFAA EWPEASFGFI TADVSFISLT HVLPTLFSYL APGGDLLALV KPQFELQPAQ
IGKGGIVRNK AYFQDVETRV RQCCRDWPMK VHAYFQSPIE GGNGNTEFFI WVRHPEPATP
AA
|
|---|
| |