Gene Lcho_0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0106 
Symbol 
ID6163521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp108666 
End bp109925 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content73% 
IMG OID641662850 
Productpolynucleotide adenylyltransferase/metal dependent phosphohydrolase 
Protein accessionYP_001789146 
Protein GI171056797 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0617] tRNA nucleotidyltransferase/poly(A) polymerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.000490543 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGATGCC TGCTCGTCGG TGGCGCGGTG CGCGACCAGC TGCTCGGCCG CCCGGTCGGC 
GACCGCGACT GGGTGGTGGT GGGCGCCACG CCCGAGCAGA TGGTGGCCGC CGGTTATCTG
CCGGTCGGGC GCGATTTCCC GGTCTTCCTG CACCCGCGCA CGCACGAGGA ATACGCGCTG
GCGCGCACCG AGCGCAAGAC CGCGCCGGGT TATCACGGCT TCGTCTTCCA CACCGGCGCC
GACGTGTCGC TCGACGACGA CCTGGCGCGA CGCGACCTGA CCATCAACGC GATGGCGCTC
GACGAGGCCG GCACGCTGAT CGACCCCTGG GGCGGCCGGC GCGACCTGGC ACACAAGTGC
CTGCGCCACG TCGGCGCCGC CTTTGCCGAA GACCCGGTGC GCATCCTGCG GCTGGCGCGG
TTTGCAGCGC GGCTGGGCGA TTTCAGCGTC GCGCCCGAGA CGCTGGCGCT GTGCCGGCGC
ATGGTCGAGG CCGGCGAGGT CGACGCGCTG GTGCCCGAGC GCGTGTGGCA GGAACTCTCG
CGCGGGCTGA TGGAGGCACG GCCCTCGCGC ATGTTCGAGG TGCTGCGCGA CTGCGGCGCG
TTGGCGCGCC TGCTGCCCGA GGTCGAGCGC CTGTTCGGCG TGCCGCAGCG CGCCGACTAC
CACCCCGAGG TCGACACCGG CGTGCACCTG ATGATGGTGC TCGACACCGC CGCGCAGAGG
GGCGTGTCGC TGCCGGTGCG TTACGCCTGC CTCGGCCACG ATCTTGGCAA GGGCACCACG
CCGGCCCACA TCCTGCCGCG CCACATCGGC CACGAGGGCC GCAGCGCGGC GCTGCTGGCG
CCCATGTCTG CGCGTCTCAA GGTGCCGGCG GCCTGTCACG AACTGGCCGA TCTGGTGGCG
CGCGAACACA GCAACGTGCA CGGCAGCGGC AACTTCGACG CCGCCGCGCT GGTGCGCCTG
TTCGACCGCT GCGACGCCTG GCGGCGCCCG GAACGTTTCG AACTGGCGCT GCAGGCCTGC
GAGTGCGATG CCCGTGGCCG GCTCGGTTTC GAGCAGGCGC ACTACCCGCA GGCGCCGCGG
CTGCGCCAGG CACTGGCGGC GGCGCGTGGC ATCGACGCCG CTGCGGTGAT GGCGTCGGCG
CGCGCGCGTG GCCTCAATGG CCCGGCGCTC GGCCGGGCGT TGCACGAGGC CCGCATCGAG
GCCGTGGCCT CAGATCCAGC GTGCCAGCGC CCAGCCGATC AGGCTCAGCA GAACGGTTGA
 
Protein sequence
MRCLLVGGAV RDQLLGRPVG DRDWVVVGAT PEQMVAAGYL PVGRDFPVFL HPRTHEEYAL 
ARTERKTAPG YHGFVFHTGA DVSLDDDLAR RDLTINAMAL DEAGTLIDPW GGRRDLAHKC
LRHVGAAFAE DPVRILRLAR FAARLGDFSV APETLALCRR MVEAGEVDAL VPERVWQELS
RGLMEARPSR MFEVLRDCGA LARLLPEVER LFGVPQRADY HPEVDTGVHL MMVLDTAAQR
GVSLPVRYAC LGHDLGKGTT PAHILPRHIG HEGRSAALLA PMSARLKVPA ACHELADLVA
REHSNVHGSG NFDAAALVRL FDRCDAWRRP ERFELALQAC ECDARGRLGF EQAHYPQAPR
LRQALAAARG IDAAAVMASA RARGLNGPAL GRALHEARIE AVASDPACQR PADQAQQNG