| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0103 |
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| Symbol | |
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| ID | 6163518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 106331 |
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| End bp | 107143 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641662847 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001789143 |
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| Protein GI | 171056794 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0000861363 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCTGTTT CCCCGTCTGC CGCCGCAACT GACCGGCCCG TCGTGCGCCG CCCGCTGACC
CTGGTCACCG GCGGCGCGCG CCGGCTCGGC CGCGCGATCG CGCTCGAACT GGCCGACGCC
CGCCACGACA TCGCGCTGCA TTACCGCGGT TCGGTCGCCG ACGCCGAAGC CACCGCCGCC
GACCTGCGCG CGCTCGGCGC CGAGGTGGCG CTGTTCCAGG CCGATCTGTC GGACGAGGCC
GCCTGCCGCG CGCTGGTGCC GGCGGTGGTG GCGCGGCTGG GCCGGCTCGA TGCGGTGGTG
AACAACGCCT CGACCTTCGA ATACGACGAG CCCGCCAGCT TCGGCCACGC CGCGATGGAG
CGCCACTGGC GCGCCAACAC CGCCGCGCCG GTGCTGCTGG CGCAGGCGCT GCACGCCCAC
CTGGGCGAGC GCAACGGGCG CGGCTGCGTC GTCAACCTGC TCGACCAGAA ACTCGTCAAC
CTCAACCCCG ACTACTTCTC GTACACGCTG TCGAAGGCCG CGCTGCAGGC CGCCACCCAG
ATGCTGGCGC TGGCGCTGGC GCCGCGGTTG CGGGTGGTGG GCGTGTCGCC GGGGGTGACG
ATGGTGTCGG GGCCGATGAG CGAGGCCGAG TTCGAGGCCG CCCACAAGCT CACGCCGCTG
CAGCGTTCGT CGACGCCCGA GGACATCGCC CGCGCGGTGC GTTTCGCGCT CGAGTCGCCC
GCCATCACCG GCAGCACGCT GCTGGTCGAC GGCGGCCAGC ACCTGCTCGG CCAGCCGCGC
GACGTGCTGT ACCTGGTGCA GCCGCCGGCC TGA
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| Protein sequence | MPVSPSAAAT DRPVVRRPLT LVTGGARRLG RAIALELADA RHDIALHYRG SVADAEATAA
DLRALGAEVA LFQADLSDEA ACRALVPAVV ARLGRLDAVV NNASTFEYDE PASFGHAAME
RHWRANTAAP VLLAQALHAH LGERNGRGCV VNLLDQKLVN LNPDYFSYTL SKAALQAATQ
MLALALAPRL RVVGVSPGVT MVSGPMSEAE FEAAHKLTPL QRSSTPEDIA RAVRFALESP
AITGSTLLVD GGQHLLGQPR DVLYLVQPPA
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