Gene Lcho_0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0094 
Symbol 
ID6161020 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp98264 
End bp98836 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content67% 
IMG OID641662838 
Producthypothetical protein 
Protein accessionYP_001789134 
Protein GI171056785 
COG category[S] Function unknown 
COG ID[COG2119] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00169792 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGGAATCAT TCCTCGTGTC CACCGGCGTC GTCGCACTCG GTGAAATGGG CGACAAGACG 
CAGTTGCTGG CGATGCTGCT GGCGGCCAGG TTCCGCAAGC CGGTGCCCAT CATCCTCGGC 
ATCCTGGTCG CCACCCTGGC CAACCATGCA CTGGCCGGTG CGGTCGGTGG CTGGGTCGCG 
CAGGCCCTCG GCCCCGACGT GCTGCGCTGG GTCATCGGGG CATCGTTCAT CGCGATGGCC 
GCGTGGATGC TCATCCCCGA CCAGATCGAC AACGAGGACG CCGGCGGTCG GCAGCTCTTC 
GGCGTGTTCG GCACCACCGT GCTGGCGTTT TTCCTGGCCG AGATGGGCGA CAAGACGCAG 
ATCGCCACCG TCGCGCTGGC GGCGCGTTAC GGCGACCTCG TCGCCGTCGT GGCCGGAACG 
ACGCTGGGCA TGATGCTGGC GAACGTGCCC GCGGTGTTCC TGGGCGACCG CATCGCCAAG 
GCGGTGTCGA TGACGCTGGT GCACAGCATT GCGGCGACGA TCTTCGCCGT GCTGGGCATG 
CTGACGCTCT TGAACGTCGG CCAGATCTTC TGA
 
Protein sequence
MESFLVSTGV VALGEMGDKT QLLAMLLAAR FRKPVPIILG ILVATLANHA LAGAVGGWVA 
QALGPDVLRW VIGASFIAMA AWMLIPDQID NEDAGGRQLF GVFGTTVLAF FLAEMGDKTQ 
IATVALAARY GDLVAVVAGT TLGMMLANVP AVFLGDRIAK AVSMTLVHSI AATIFAVLGM 
LTLLNVGQIF