Gene Lcho_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0088 
Symbol 
ID6160354 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp92178 
End bp92639 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content68% 
IMG OID641662832 
Productrhodanese domain-containing protein 
Protein accessionYP_001789128 
Protein GI171056779 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0607] Rhodanese-related sulfurtransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.00487418 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGACTCT CCCTGATTGC CACCACCCTG TGCGCCGCCG CGCTCCACCT CGCCCCGCTG 
CCGGCGCTGG CCGAAGACAA GGCCGTCATC GACGCGATGG AGGGTTACCT CGATTTCGTC 
GATTACGGCG GCGCGACGAT CTTCCCCGAG CAGATCCCGA AGGACGACTG GAAATCGTTC 
TTCGTCATCG ACGCCCGCGA CAAGGAGCAG TTCGCCAAGG AGCACATCCC CGGCGCGGTC 
AACATCGAAT GGCGCCGCGC CCTGGCCGAA CGCGGCCGCA TCCCGAAGGA CAAGCCGGTG 
CTGCTGTACT GCAACACCGG CACGCTGTCG GCGCAGGCCG GCTTCGCGCT GCGGGTGGCC 
GGCTACGAAA ACGTGCGCAT CCTGCAGGGC GGCTACGCCG AGTGGAAGGC CAAGGGCGGC 
TTCGATGCCG CGGCCCGGGC GACCGGCGCG GTCAAGCACT GA
 
Protein sequence
MRLSLIATTL CAAALHLAPL PALAEDKAVI DAMEGYLDFV DYGGATIFPE QIPKDDWKSF 
FVIDARDKEQ FAKEHIPGAV NIEWRRALAE RGRIPKDKPV LLYCNTGTLS AQAGFALRVA 
GYENVRILQG GYAEWKAKGG FDAAARATGA VKH