| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0087 |
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| Symbol | |
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| ID | 6160353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 90047 |
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| End bp | 92119 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641662831 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001789127 |
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| Protein GI | 171056778 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0196259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTCTT CCGCCCTGGC TCACGCGCCG TCGCAGCGCG CCCACATGGC CACCGTCATG
CAGGTGGCCG ACGCGGGTGT GGCGGCGCCT GCTGCGGCGC GCCACGACGC CCTGATCCGC
GCCAGCTGGC AGCGCTGCGT GCACCAGCAC CGGCTCGACC CCACGCGCAT GCAGGAGGCC
GTGATCCTGC CGCAGCCGCG CCTGCGCGAG CACCAGGGCC AGATGGAGGA CTTCCTGCAG
ATCGCCCGCC ACGGCCTGGA GGCGCTCTAC CAGCAGGTGG CTGGCCTGGG TTACGTGGTG
CTGCTGACCG ATGCGCGCGG CGTCACGGTC GATTTCATCG GCGACCTGCT CGTCGAGCCC
GGCCTGCGCA AGGCCGGGCT GTACCTGGGC GCCGACTGGA GCGAGCACCA CGCCGGCACC
TGCGGCGTGG GCACCTGCAT CAGCACCGGC CAGGCGCTGA CGGTGCACCT CGACGACCAC
TTCGACGCCA CCCACATCCC GCTGACCTGC ACCGCCGCCC CGGTGTTCGA CACGGTCGGC
CGGCTCAACG CCGTGCTCGA CATCTCGCAG CTCAGCAGCC ACCAGCCCAA GGCGAGCCAG
CACCTGGCGC TGCAGCTGGT GAAGGTCTAT GCCCAGCACG TCGAGAACGC CGCCTTCCTG
CAGCGCCATC GCCACGACTG GGTGCTGCGG CTGAGCGAGG CGCCGCAGTT CCTCGACGTC
AACCCCGACT ACCTGCTGGC GCTCGACGCG GCCGGGCGCG TGATCGGCCA CAACCGGCGC
GCCCAGCTGC TGTTCGAGCC GGGCTTGCCG GGCCTGTCGG GCCGCACGAC GACGGCGCCG
GACCGCGGGC CGTCGGCGCT GATCGGCCAG CCGATCGGGC GTCTGCTGGC GCTGTCGGTC
GGCGACCTCG GCCGCTTCGT GCAGGGCCGC GCAGCCGACC GGCGCGCGGT GCTGCGCAGC
GGCGCCCGGC ACGTGCTGTT CCTGCATGCC GCGCCGCCAC CGGCGCCGCT GCGCACGGCG
GCCAGCGAAC CGGGCCGGGT CACGACCGAG CGCCAGCTGC CTGCGCCGCT GGCCGCGCTG
TCGGGTGGCG ACGCCGCGCT CGACCGCCAG ATCGCGCGCG CCGCCCGGCT CGTCGACAGC
CCCGTCAGCC TGCTGATCAC CGGCGAGACC GGCAGCGGCA AGGAGTATTT CGCCAAGGCC
CTGCACGCCA GCAGCGAGCG CCGCGGTGGG CCGTTCGTGG CGGTCAACTG CGCGGCGATT
CCCGAGTCGC TGATCGAGAG CGAGCTGTTC GGCCACCTGC CCGGCAGCTT CTCGGGCGCC
GGCCCCAAGG GCAAGAAAGG CCTGATCCAG GAGGCCGACG GCGGCACGCT GTTCCTCGAC
GAGATCGGCG ACATGCCACG CGCCCTGCAG GCCCGCCTGC TGCGCGTGCT GGCCGAGCGC
GAGGTGCTGC CGATCGGCGC GACCCGGCCC ACGCCGGTCG ACCTGCGCGT GATCGCCGCC
ACCCATTGCC CGCTCGAAGC GCTGGTGCGC GAGGGGCGTT TCCGCGACGA CCTGTATTAC
CGCCTCAACG GCGCGCACGT GGTGCTGCCG CCGCTGCGCG AGCGCCAGGA TCTGGACGTG
CTGATCGACC GCATGCTCGC GCCGTGTGGT GACGCGCCGG CGCCGCGGCA ACGTGCTGCC
GCCCTGCGTG AACCTGCGAC CCGCCTCGCT GCCGACGCGC GTGCCGCGCT GCACGCGCAC
CCCTGGCCCG GCAATCTGCG GGAGCTGCGC AACGCGCTCG ACTACGCGCG CACGCTGTGC
GACGACGGCC TGATCCGGCT CGGCGATCTG CCCGATGCGC TGCTGGCGGC GAGCCCGCCG
GTCGCACGGC GCCCGAGCGG CCCGGACATC TGGCAGCCGG GCTCGACGCT GCACGCGCCG
GTGGCCGATG AAGCCGCGCA ACTGCTGCAG GCGCTGCGCG CGGCGCGCTG GAACGTCTCG
GCGGTGGCGC GCGAGCTGGG CTGCTCGCGC ATGACGCTGT ATCGGCGCAT GAAGCGCCTG
GAGATCCGCT CGCCGCTGGA GGCGCGCGAG TGA
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| Protein sequence | MPSSALAHAP SQRAHMATVM QVADAGVAAP AAARHDALIR ASWQRCVHQH RLDPTRMQEA
VILPQPRLRE HQGQMEDFLQ IARHGLEALY QQVAGLGYVV LLTDARGVTV DFIGDLLVEP
GLRKAGLYLG ADWSEHHAGT CGVGTCISTG QALTVHLDDH FDATHIPLTC TAAPVFDTVG
RLNAVLDISQ LSSHQPKASQ HLALQLVKVY AQHVENAAFL QRHRHDWVLR LSEAPQFLDV
NPDYLLALDA AGRVIGHNRR AQLLFEPGLP GLSGRTTTAP DRGPSALIGQ PIGRLLALSV
GDLGRFVQGR AADRRAVLRS GARHVLFLHA APPPAPLRTA ASEPGRVTTE RQLPAPLAAL
SGGDAALDRQ IARAARLVDS PVSLLITGET GSGKEYFAKA LHASSERRGG PFVAVNCAAI
PESLIESELF GHLPGSFSGA GPKGKKGLIQ EADGGTLFLD EIGDMPRALQ ARLLRVLAER
EVLPIGATRP TPVDLRVIAA THCPLEALVR EGRFRDDLYY RLNGAHVVLP PLRERQDLDV
LIDRMLAPCG DAPAPRQRAA ALREPATRLA ADARAALHAH PWPGNLRELR NALDYARTLC
DDGLIRLGDL PDALLAASPP VARRPSGPDI WQPGSTLHAP VADEAAQLLQ ALRAARWNVS
AVARELGCSR MTLYRRMKRL EIRSPLEARE
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