Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0086 |
Symbol | |
ID | 6160352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 88612 |
End bp | 89895 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641662830 |
Product | D-serine deaminase |
Protein accession | YP_001789126 |
Protein GI | 171056777 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3616] Predicted amino acid aldolase or racemase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.01292 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCTC CGACCGCCGA CGCCCTGATC GACCCCCAGC TCGACGCCAG CTTCAAGGGC TATCCGCCCG ACGCCCCGCC GCTGCGCCGC TCGCAGATCG CCGCGAGGGG CTGGAACGTG CTGGCCGGCG ACCTGCCCTT GCCGCTGGCG GTGATCCGGC GCGAGCCGCT GGCCCACAAC CTCGGCTGGA TGCAGCGCCA CGTGGCGGCC GCCGGCATCG CGCTGGCGCC GCACGGCAAG ACGACCTTGT CGCCGCAGCT GTTTGCCGCA CAGGTCGAGG CCGGCGCCTG GGGCATCACC TTCGCCAACG TGCACCAGCT CGCGCTCGGC GTGGCCGGCG GCGTGCGCCG GGCGCTGATC GCCAACCAGG TGATCCAGGC CGGCGACCTG CACCAGCTGG CCGCCTTGCG CGCGCAGCAT CCGGGCCTGC GGGCGCCGTT CTTCATCGAC TCGGCGGCGC AGCTCGCGCT GATCGAGGCG CAGGCGCTGC CAGCGCCGCT GGAGGTGCTG CTCGAACTCG GCCTGCCCGG CGGGCGCACC GGCTGCCGCG GTCACGAGCA GGCGCTGGCG CTGGCCCGTG CGGTGCACGC CAGCCCGGCG CTGCAGCTGG CCGGCATCAG CACCTACGAA GGCCTGTGGG GCAGCGGTGA CGACGCCGCC GATCGTGCGC TGGCCGAGGG CCTGATGCAG CGCGTGCACG CCCTGGCGCT GGCCTGCGAG CACGAGGCGC TGTTCGACAC CGACGAGGTC ATCGTCAGCG CCGGCGGCTC GGCGCTCTTC GATCGGGTGT CGCAGGCCCT GCGCCCGCCG CTGCGCAAGC CGGTGCTCGG CCTGCTGCGC TCGGGCTGCT ACGTGACGCA CGACGACGGC CACTACCGGC GCATGGTGCA CGTCGCCAAC CGGCGTCTGG GCTGTGCCGA TGCCGACGGC CTGCGCGCGG CGCTGCAGGT CTGGACGCTG GTGCAATCCT GCCCCGAGCC GGGACTGGCG ATCCTCAACG CCGGCAAGCG CGACCTGTCG TTCGACATGG GCCTGCCGGT GCCGGTGATG TTCTGCCCGC AAGGCGAGCG CACCGCGCGC GCGGTGCCGG CGGGCTGGCA GATCAGCGCA CTCAACGACC AGCACGCCTA CCTGCGGCTC GGTGACGACG CCAGTGCGCT GCAGGTCGGC GACCGCGTCG CGCTGGGCAT CTCGCACCCC TGCACCACCT TCGACAAGTG GCGCTGGATG CCGGTGGTCG ACGAGGCGCT GCGCGTGGTC GACGCCATCA CCACGCTGTT CTGA
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Protein sequence | MPAPTADALI DPQLDASFKG YPPDAPPLRR SQIAARGWNV LAGDLPLPLA VIRREPLAHN LGWMQRHVAA AGIALAPHGK TTLSPQLFAA QVEAGAWGIT FANVHQLALG VAGGVRRALI ANQVIQAGDL HQLAALRAQH PGLRAPFFID SAAQLALIEA QALPAPLEVL LELGLPGGRT GCRGHEQALA LARAVHASPA LQLAGISTYE GLWGSGDDAA DRALAEGLMQ RVHALALACE HEALFDTDEV IVSAGGSALF DRVSQALRPP LRKPVLGLLR SGCYVTHDDG HYRRMVHVAN RRLGCADADG LRAALQVWTL VQSCPEPGLA ILNAGKRDLS FDMGLPVPVM FCPQGERTAR AVPAGWQISA LNDQHAYLRL GDDASALQVG DRVALGISHP CTTFDKWRWM PVVDEALRVV DAITTLF
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