Gene Lcho_0083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0083 
Symbol 
ID6160349 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp85554 
End bp86225 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content72% 
IMG OID641662827 
ProductDSBA oxidoreductase 
Protein accessionYP_001789123 
Protein GI171056774 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3917] 2-hydroxychromene-2-carboxylate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0411784 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACCG ATGACTGCAA CGATGCGGCG CCGCCGCGGC AGGTCGAGTT CTGGCTCGAC 
TTCGGCAGCA ACTACAGCTA CCTGAGCGCG ATGCGCATCG AAGCGGCGGC GCAGCAACTG 
GGGCTGACGG TGGCGTGGCG GCCCTTCCTG CTCGGGCCGA TCTTCAAGTC CTTCGGCTGG 
GACAGCTCGC CCTTCGTGCT GCAGAAGGAA AAGGGCGCCT ACATGTGGCG CGACATGGAG 
CGCCAGTGCG CGAAGCACGG CCTGCCCTGG CGCAAGCCCT CGGTCTTTCC GCGCAGCGCG 
GTGCTGCCGA TGCGGGTGGC GGCGGCACAC GCCGAGCAGC CCTGGATCGG CGCCTACTGT 
CGCGAGACGA TGCGCCTGAA CTTCGCGCTC GACCGCGATC TCGACAGCGA GGATTCCGTC 
GCCGGCGTGC TGCGCGGGCT CGGCCTGCCG GCAGCAGAGC TGATCGACGC GGCGCGCGAC 
GGGCCGCGGC GCGGCCGGCT GCGCGAGTTG ACCGCCGAGG CGCAGCGCCG GGGCCTGTTC 
GGCGCGCCGA GCTTGTTCGC GCGCGGCGAA CTGTTCTGGG GCAACGACCG GCTCGACGAT 
GCGCTGGCGT TCGCGGCGCA GGGCACCGCG GGCCGCGTCA GGCCGACCGA CACGGCGAGG 
TGGCCGCAGT GA
 
Protein sequence
MTTDDCNDAA PPRQVEFWLD FGSNYSYLSA MRIEAAAQQL GLTVAWRPFL LGPIFKSFGW 
DSSPFVLQKE KGAYMWRDME RQCAKHGLPW RKPSVFPRSA VLPMRVAAAH AEQPWIGAYC 
RETMRLNFAL DRDLDSEDSV AGVLRGLGLP AAELIDAARD GPRRGRLREL TAEAQRRGLF 
GAPSLFARGE LFWGNDRLDD ALAFAAQGTA GRVRPTDTAR WPQ