| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0043 |
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| Symbol | |
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| ID | 6160067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 47734 |
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| End bp | 49365 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641662787 |
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| Product | transcriptional regulator domain-containing protein |
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| Protein accession | YP_001789083 |
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| Protein GI | 171056734 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5616] Predicted integral membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.930122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCATC GCTACACCAC CGGCGAATTC GAGGTCCGGC CCGACGAACG CCGCGTGCTC
CTGCGCGGCG AGCCGGTTCC GCTGGGCGCC CGGGCCTTCG ACGTGCTGAT GTGCCTGATC
GCGCAGCGCG AGCGTGTCGT CACCAAGAAC GAGCTGCTCG AACAGGTCTG GCCCGGCATG
GTGGTGGAGG AGAACAACCT CACCGTGCAC GTCTCGGCGC TGCGCAAGGT GTTCGGCGCG
CAGGCGGTGG CGACGATCCC CGGCCGCGGT TATCGCTTCG TGATGGCGCT CGACGAAACG
ACCGGCGCGC CGGCCGTTGC ACCGGTGCCC GCACCCGCGC CCGCATCCGT CGTGGGGGCC
GATGGCCCGA CCGGGCTGAC ACTGCCCGAC CGTCCCTCGA TCGCCGTGCT GCCGCTCGAC
AACCTGAGCG GCGACGCACA GCAGGATCTG CTGATCGAGG GCCTCAGCGA GGACGTCATC
ACCGAGCTGT CGCGTTTTCG CTCGCTGTTC GTGATCGCGC GCAACAGCAG CTTCAGCTTT
CGCGGCCTGG CCCACGGCGA GCGCGACGTG CGCGCCATCG CCCGCGAGTT GGGCGTGCGT
TACGTGCTCG AAGGCAGCTT GCGCCGCGCC GGTGATCGGG TGCGCGTGGC GGTGCAACTG
GTCGATGCGG TGAGTGCCAC CCAGCTCTGG GCCGAGAAGT ACGACCGCGC GGTCGATGAT
CTGTTCGCGC TGCAGGAGGA GCTCACCCGC GCCATCGTCG GCGCGATCGC GCCGCAGATC
GAAGCCGGCG AGTTCCAGAA GATCCGCAGT GCGCGCGGGC GCGATCTCAA CGCTTACACG
CTCGCCATGC GCGCCCGCGA CACCGCGCGC CGCGCCGACC GCGAGGGCGA CGCCACCACG
CGCGACGAGG CGCTGCGGCT GGCGCACGAA GCGGTGGAGA TCGACCCCGG CTGCGGCGTT
GCGCTGGCCA CCATTGCCTT CGTCCAGTGG CAGCAGATCT GGGCCGGCAG CGCCGCCTCG
CCCGTCGATG CGGCCGTGGC CGGCCTGGCC GCAGCGCGCC GGGCGATCGC GCTCGACGGC
TCGGATCACC ACGCCCATCT GTGGAAAGCG ATGCTGCAGC TGTTCACGCA CCAGCACGCC
GCCGGCCTGG CCGACCTGCA GCGTGCTCAC GAACTCAACC CCAACGACGC GTTGACGCTG
AGCCTGCTCG GCCAGTACCT GGCTGCCGAG GCGGACAGCG CGGCCGACGC GGCAACCGGC
GTGCGCCATG TGCTCGACGC CCTGCGCCTG AGCCCGCGCG ATCCGCTGCG CTGGTCGTTC
CTGAACTCGC TCGCGTGGGC CTCGTTTGCC GCGTTCGACC ATGCCGGCGC GGTCGACGCC
GCCAGCCGCG CCCTCGGGGA GGCGCCGCAG TTCCCGCCAG CGCGGCTGTG CCGGGTGATC
GGCCAGGTCG GCCTGGGTGC GATCGACGCG GCGCGGGCCG ATTTCGAGAC CTTGCGTGCG
CTGGCGCCGC AGATGGTCGC CACCCGGCTG GCCGGCGACT GGTCCTACGC CAACCCGGCG
CTGGTGCAGC GCGCCACCGC CTTCCTGCGG GTGGCGGCAG GCCTCGACGA GCCGGGCCGG
CTCGACACCT GA
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| Protein sequence | MSHRYTTGEF EVRPDERRVL LRGEPVPLGA RAFDVLMCLI AQRERVVTKN ELLEQVWPGM
VVEENNLTVH VSALRKVFGA QAVATIPGRG YRFVMALDET TGAPAVAPVP APAPASVVGA
DGPTGLTLPD RPSIAVLPLD NLSGDAQQDL LIEGLSEDVI TELSRFRSLF VIARNSSFSF
RGLAHGERDV RAIARELGVR YVLEGSLRRA GDRVRVAVQL VDAVSATQLW AEKYDRAVDD
LFALQEELTR AIVGAIAPQI EAGEFQKIRS ARGRDLNAYT LAMRARDTAR RADREGDATT
RDEALRLAHE AVEIDPGCGV ALATIAFVQW QQIWAGSAAS PVDAAVAGLA AARRAIALDG
SDHHAHLWKA MLQLFTHQHA AGLADLQRAH ELNPNDALTL SLLGQYLAAE ADSAADAATG
VRHVLDALRL SPRDPLRWSF LNSLAWASFA AFDHAGAVDA ASRALGEAPQ FPPARLCRVI
GQVGLGAIDA ARADFETLRA LAPQMVATRL AGDWSYANPA LVQRATAFLR VAAGLDEPGR
LDT
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