Gene Lcho_0027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0027 
Symbol 
ID6159817 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp32460 
End bp33089 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content71% 
IMG OID641662772 
ProductFMN-binding negative transcriptional regulator 
Protein accessionYP_001789068 
Protein GI171056719 
COG category[K] Transcription 
COG ID[COG2808] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.467521 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACCTGC CCGCCCAGTT CGAAGAACGC CGCCCCGAAG TGCTGCACGC GCTGCTGCGC 
GCCCACCCGC TGGCCACCTG GGTCAGCCAG CGTGACGGCG AGCTGGTGGT CGAACACGTG 
CCGTTCCTGC TCGACCCGGC ACGCGGTGAA CACGGCACGC TGATCGGCCA CGTGGCGCGC 
GCCAATCCGG TCTGGCGCCA GCTCGCGGCC AGCGTGCTGG TGTTCCAGGG GCCGCAGGCT 
TACGTGTCGC CGGCCTGGTA CCCGAGCAAG CAGGTGCACG GCAAGGTGGT GCCGACCTGG 
AACTACGCGG TGGTGCATGC ACACGGCCAG CCGCGTGCGA TCGAGGATCC GGCCGCGCTG 
CGGCAGATCG TCAGCCGCCT GACCGACACG CACGAAGCCG GCCGCGCGCA GCCCTGGCAG 
GTGGCCGATG CGCCGGCCGA CTACATCGAC CAGATGCTGG CCGCGATCGT CGGCATCGAG 
ATGCCGATCG AGCGGCTGGT CGGCAAGTGG AAGGTCAGCC AGAACCGTTC GGCTGCCGAC 
CGCGCCGGGG TGGCGGCCGG GCTGCTGGCC GATGCGGCAC CGCAGGCCGC GGCGATGGCC 
GCACTTGTTC AACCTTCAAC CGATGCCTGA
 
Protein sequence
MYLPAQFEER RPEVLHALLR AHPLATWVSQ RDGELVVEHV PFLLDPARGE HGTLIGHVAR 
ANPVWRQLAA SVLVFQGPQA YVSPAWYPSK QVHGKVVPTW NYAVVHAHGQ PRAIEDPAAL 
RQIVSRLTDT HEAGRAQPWQ VADAPADYID QMLAAIVGIE MPIERLVGKW KVSQNRSAAD 
RAGVAAGLLA DAAPQAAAMA ALVQPSTDA