Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0016 |
Symbol | |
ID | 6160076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 16419 |
End bp | 19187 |
Gene Length | 2769 bp |
Protein Length | 922 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641662761 |
Product | polysaccharide deacetylase |
Protein accession | YP_001789057 |
Protein GI | 171056708 |
COG category | [S] Function unknown |
COG ID | [COG3868] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00621285 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTCGGTG GCGCGCACGC AGCCAGCCGC CTACCTGCTA GTACCGCGCT GTATTACGGC GCCGAGCCGC CGTTCGACGA GCTGGCCGCG TTCGACTGGG TGGTGCTCGA ACCCGGCCAC GGCCACGACC TGGCGCAGGC GGGCGCGCGC ATGCCGCGCA CGCAGCTGCT GGCCTACCTG TCGGTCGGCG AGGTGCTGCC GCAGGCGCCG CACTACGCCG CCCTGCCGCC GGCCTGGCGG ATCGGCCACA ACGCCTCCTG GCGCAGCGAG GTGCTCGACC AGCGCCCGGC CGACTGGCCG GCCTGGTTCG TCGAGCAGGT GGCGCGGCCG CAGTGGCAGC GCGGCTACCG CGGCTTCTTC CTGGACACGC TCGACTCGTA TCAGCTGGTC GCGGCCACCG CCGAGGAACG CGCGCTGCAG CAGGCCGGCC TGGTGCGCGT GATCCGGGCG CTGCGGGCGG CCTTCCCGTC GGCCCGGCTG ATCGTCAACC GCGGCTTCGA GCTGCTGCCG CAGGTGGCCA CCCAGGTCGA CATGGTGGCG GCCGAGTCGC TCTACCGGCG CTGGAACCCG GTCGATGCGC GCTACGAGGA CGTGAGCGCC GACGACCGCG CCTGGCTGCT CGCGCAGTTC GAGCAGGTGC GCGAGCAGCA CGGCCTGCCG CTGCTGGCGA TCGACTATGT GGCACCCGGC GACCGCGCAC GGGCGCGCGA ACTGGCTGCT CGCATCGCCG CGCACGGCCT CCAGCCCTTT GTCGTCAACG GGGCGCTCGA CCAGCTCGGG CTCGGTGCCA TCGAGGTGCT GCCGCGCCGG GTGCTGATGC TGCACGACGC GCCGATGCAG CGCGCCTCCG ACATCACCTA CTCGGTGATC CACCAGTACG TCGACATGCC GGTGTTCCAC CTCGGCCTGA TCCCGCAGCA CCTGCAGGTC GACCGCGATG CGCTGCCCGA CTACCCGCTG GCCGGGCGCA TCGCCGGCAT CGTCACGCAT TTCGACAGCG ATCGCGCCCG CCCGGCGCTG GCGGCGTTCC TGAAGCGCGC GATCGCCGAG GGCATCAAGG TCGTCAGCCT GGGCCAGCCC GGCGTGGGCA GCGGCCCGGC ACTGGCCGAG ACCTTCGGCC TGCAGACCCG CCCGGGTGCG CCGCTGCCGC TGGCGCCGGT GCGCGTGAGC CAGCAGGGCC GCGAGATCGG CTTCGAGCTG GCGCCGCTGC CGACCGTGGC GGGCTTCCGC CCGCTCGCCG CCCCCCCGGG CGCGCAGCCG CTGCTGACGC TGCGCGACGC CCGCGGCGCC ACGATGGACG CCATCGCCTT CACGCCCTGG GGCGGCTATG CGCTGTGGGG CCAGGCCCTG GCGCGCCTGC CGAGCCGGCC CGACGAGGTG CGCTGGGTGG TCGATCCGAT CGCCTTCCTG CGCCAGGCGC TGGCCCTGCC GCCGATGCCG GTGCCCGATC TCGCCACCGA GACCGGCCGC CGCCTGCTGC TGGCCCATGT CGACGGCGAC GGCTTCGCCA ACTTCAGCGA CCAGCCGGGC TCGCCGATGG CCAGCGCGGT GCTGCTGCGC GAGGTCTTCG AGCGCTACCG GGTGCCGACC ACGATGTCGG TGATCGAGGG CGAGACCGCG CCGCACGGCC TGTACCCGCA GCACGCGGCC GAGCTCGAGG CGATCGCGCG GCGCATCTTC GCGCTGCCGC ACGTCGAGAT CGGCAGCCAC AGCTACTCGC ACCCCTTCAA CTGGGAACGG GCCGCCGCCG CCCGGGACGA CGGCCGCTAC CGGCTGCAGC TGCCCGACTA CGTGTTCGAC ACCGAGCGCG AGGTGGCGGG CTCGATCCGC TACATCGAGG AGCGCCTCGC GCCGGCCGGC AAGAAGGTGC GCCTGTACCA GTGGAGCGGC AACACCAACC CGGGCGAGGC CGCGCTGGCG GCGGTCGAGC GCGCCGGCAT CGGCTCGATC AACGGCGGCG AGACGCTGAT CACGCGGGCC CAGCCCTCGC TGACCAAGGT GGCACCGCCG GGGGTGCGCA AGGGCGCGCA TTTCCAGGTC TATGCGCCCA ACCAGAACGA GAACGTCTAC ACCAACCACT ACACCGCGCC GCTGTACGGC TACGAGCGCG TGATCGAGAC CTTCGAGCTG ACCGGGCAGC CCTACCGACT CAAGCCGATC AACCTGTATT TCCACACCTA CGCGGCGTCG CGGCAGGCCT CGCTCGAAGC GCTGCACAAG GCCTGGCGCT GGGCGCTGGC GCAGCCGGTG CACCCGGTCT TCACCTCGGC CTACGTGGCG CGGGTGCGCA ACTTCGAGCA GGTCGTGATC GCCCGCGGCG CCGACGGTTT CCTGGTGCGC GGCGCGCAGG CGCTGCGGCA GCTGCGCGCA CCGGCCTCGC TGGGCGTGCC GCAGATCGCC GGCAGCCGGG CGCTGGCCGG CTACACCGAG CCCGACGCCG TCGAGGGCAC CGACGGCCTG GCCGGCGCGG GCGAGCGCTA CCTGCACCTG GCCGCCGACG AGGCCTGGCT GCGGTTCGAC CGCCAGGGCG ACGGCGCGCC GCGGCTGGTC GACGCCAACG GTCGCGTCGA GGCCCACGAA CACGCCGGCG GCCGCACCCG CCTGCGCCTG GCGGCCCAGG TGCCGCTGCA GTTTTCCCTT CGGCACGGAC CGCGTTGCAC GGTCGCCGCC GACCCGCAGC CCGTGACGGT CTCCGCCGAC CCGTCCGGCC TGTCCCGTTA CGCAATGGAC CCCCATGGAT CAGCGACGAT CACGATTGCG TGCCCCTGA
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Protein sequence | MLGGAHAASR LPASTALYYG AEPPFDELAA FDWVVLEPGH GHDLAQAGAR MPRTQLLAYL SVGEVLPQAP HYAALPPAWR IGHNASWRSE VLDQRPADWP AWFVEQVARP QWQRGYRGFF LDTLDSYQLV AATAEERALQ QAGLVRVIRA LRAAFPSARL IVNRGFELLP QVATQVDMVA AESLYRRWNP VDARYEDVSA DDRAWLLAQF EQVREQHGLP LLAIDYVAPG DRARARELAA RIAAHGLQPF VVNGALDQLG LGAIEVLPRR VLMLHDAPMQ RASDITYSVI HQYVDMPVFH LGLIPQHLQV DRDALPDYPL AGRIAGIVTH FDSDRARPAL AAFLKRAIAE GIKVVSLGQP GVGSGPALAE TFGLQTRPGA PLPLAPVRVS QQGREIGFEL APLPTVAGFR PLAAPPGAQP LLTLRDARGA TMDAIAFTPW GGYALWGQAL ARLPSRPDEV RWVVDPIAFL RQALALPPMP VPDLATETGR RLLLAHVDGD GFANFSDQPG SPMASAVLLR EVFERYRVPT TMSVIEGETA PHGLYPQHAA ELEAIARRIF ALPHVEIGSH SYSHPFNWER AAAARDDGRY RLQLPDYVFD TEREVAGSIR YIEERLAPAG KKVRLYQWSG NTNPGEAALA AVERAGIGSI NGGETLITRA QPSLTKVAPP GVRKGAHFQV YAPNQNENVY TNHYTAPLYG YERVIETFEL TGQPYRLKPI NLYFHTYAAS RQASLEALHK AWRWALAQPV HPVFTSAYVA RVRNFEQVVI ARGADGFLVR GAQALRQLRA PASLGVPQIA GSRALAGYTE PDAVEGTDGL AGAGERYLHL AADEAWLRFD RQGDGAPRLV DANGRVEAHE HAGGRTRLRL AAQVPLQFSL RHGPRCTVAA DPQPVTVSAD PSGLSRYAMD PHGSATITIA CP
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