Gene Lcho_0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0016 
Symbol 
ID6160076 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp16419 
End bp19187 
Gene Length2769 bp 
Protein Length922 aa 
Translation table11 
GC content74% 
IMG OID641662761 
Productpolysaccharide deacetylase 
Protein accessionYP_001789057 
Protein GI171056708 
COG category[S] Function unknown 
COG ID[COG3868] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00621285 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTCGGTG GCGCGCACGC AGCCAGCCGC CTACCTGCTA GTACCGCGCT GTATTACGGC 
GCCGAGCCGC CGTTCGACGA GCTGGCCGCG TTCGACTGGG TGGTGCTCGA ACCCGGCCAC
GGCCACGACC TGGCGCAGGC GGGCGCGCGC ATGCCGCGCA CGCAGCTGCT GGCCTACCTG
TCGGTCGGCG AGGTGCTGCC GCAGGCGCCG CACTACGCCG CCCTGCCGCC GGCCTGGCGG
ATCGGCCACA ACGCCTCCTG GCGCAGCGAG GTGCTCGACC AGCGCCCGGC CGACTGGCCG
GCCTGGTTCG TCGAGCAGGT GGCGCGGCCG CAGTGGCAGC GCGGCTACCG CGGCTTCTTC
CTGGACACGC TCGACTCGTA TCAGCTGGTC GCGGCCACCG CCGAGGAACG CGCGCTGCAG
CAGGCCGGCC TGGTGCGCGT GATCCGGGCG CTGCGGGCGG CCTTCCCGTC GGCCCGGCTG
ATCGTCAACC GCGGCTTCGA GCTGCTGCCG CAGGTGGCCA CCCAGGTCGA CATGGTGGCG
GCCGAGTCGC TCTACCGGCG CTGGAACCCG GTCGATGCGC GCTACGAGGA CGTGAGCGCC
GACGACCGCG CCTGGCTGCT CGCGCAGTTC GAGCAGGTGC GCGAGCAGCA CGGCCTGCCG
CTGCTGGCGA TCGACTATGT GGCACCCGGC GACCGCGCAC GGGCGCGCGA ACTGGCTGCT
CGCATCGCCG CGCACGGCCT CCAGCCCTTT GTCGTCAACG GGGCGCTCGA CCAGCTCGGG
CTCGGTGCCA TCGAGGTGCT GCCGCGCCGG GTGCTGATGC TGCACGACGC GCCGATGCAG
CGCGCCTCCG ACATCACCTA CTCGGTGATC CACCAGTACG TCGACATGCC GGTGTTCCAC
CTCGGCCTGA TCCCGCAGCA CCTGCAGGTC GACCGCGATG CGCTGCCCGA CTACCCGCTG
GCCGGGCGCA TCGCCGGCAT CGTCACGCAT TTCGACAGCG ATCGCGCCCG CCCGGCGCTG
GCGGCGTTCC TGAAGCGCGC GATCGCCGAG GGCATCAAGG TCGTCAGCCT GGGCCAGCCC
GGCGTGGGCA GCGGCCCGGC ACTGGCCGAG ACCTTCGGCC TGCAGACCCG CCCGGGTGCG
CCGCTGCCGC TGGCGCCGGT GCGCGTGAGC CAGCAGGGCC GCGAGATCGG CTTCGAGCTG
GCGCCGCTGC CGACCGTGGC GGGCTTCCGC CCGCTCGCCG CCCCCCCGGG CGCGCAGCCG
CTGCTGACGC TGCGCGACGC CCGCGGCGCC ACGATGGACG CCATCGCCTT CACGCCCTGG
GGCGGCTATG CGCTGTGGGG CCAGGCCCTG GCGCGCCTGC CGAGCCGGCC CGACGAGGTG
CGCTGGGTGG TCGATCCGAT CGCCTTCCTG CGCCAGGCGC TGGCCCTGCC GCCGATGCCG
GTGCCCGATC TCGCCACCGA GACCGGCCGC CGCCTGCTGC TGGCCCATGT CGACGGCGAC
GGCTTCGCCA ACTTCAGCGA CCAGCCGGGC TCGCCGATGG CCAGCGCGGT GCTGCTGCGC
GAGGTCTTCG AGCGCTACCG GGTGCCGACC ACGATGTCGG TGATCGAGGG CGAGACCGCG
CCGCACGGCC TGTACCCGCA GCACGCGGCC GAGCTCGAGG CGATCGCGCG GCGCATCTTC
GCGCTGCCGC ACGTCGAGAT CGGCAGCCAC AGCTACTCGC ACCCCTTCAA CTGGGAACGG
GCCGCCGCCG CCCGGGACGA CGGCCGCTAC CGGCTGCAGC TGCCCGACTA CGTGTTCGAC
ACCGAGCGCG AGGTGGCGGG CTCGATCCGC TACATCGAGG AGCGCCTCGC GCCGGCCGGC
AAGAAGGTGC GCCTGTACCA GTGGAGCGGC AACACCAACC CGGGCGAGGC CGCGCTGGCG
GCGGTCGAGC GCGCCGGCAT CGGCTCGATC AACGGCGGCG AGACGCTGAT CACGCGGGCC
CAGCCCTCGC TGACCAAGGT GGCACCGCCG GGGGTGCGCA AGGGCGCGCA TTTCCAGGTC
TATGCGCCCA ACCAGAACGA GAACGTCTAC ACCAACCACT ACACCGCGCC GCTGTACGGC
TACGAGCGCG TGATCGAGAC CTTCGAGCTG ACCGGGCAGC CCTACCGACT CAAGCCGATC
AACCTGTATT TCCACACCTA CGCGGCGTCG CGGCAGGCCT CGCTCGAAGC GCTGCACAAG
GCCTGGCGCT GGGCGCTGGC GCAGCCGGTG CACCCGGTCT TCACCTCGGC CTACGTGGCG
CGGGTGCGCA ACTTCGAGCA GGTCGTGATC GCCCGCGGCG CCGACGGTTT CCTGGTGCGC
GGCGCGCAGG CGCTGCGGCA GCTGCGCGCA CCGGCCTCGC TGGGCGTGCC GCAGATCGCC
GGCAGCCGGG CGCTGGCCGG CTACACCGAG CCCGACGCCG TCGAGGGCAC CGACGGCCTG
GCCGGCGCGG GCGAGCGCTA CCTGCACCTG GCCGCCGACG AGGCCTGGCT GCGGTTCGAC
CGCCAGGGCG ACGGCGCGCC GCGGCTGGTC GACGCCAACG GTCGCGTCGA GGCCCACGAA
CACGCCGGCG GCCGCACCCG CCTGCGCCTG GCGGCCCAGG TGCCGCTGCA GTTTTCCCTT
CGGCACGGAC CGCGTTGCAC GGTCGCCGCC GACCCGCAGC CCGTGACGGT CTCCGCCGAC
CCGTCCGGCC TGTCCCGTTA CGCAATGGAC CCCCATGGAT CAGCGACGAT CACGATTGCG
TGCCCCTGA
 
Protein sequence
MLGGAHAASR LPASTALYYG AEPPFDELAA FDWVVLEPGH GHDLAQAGAR MPRTQLLAYL 
SVGEVLPQAP HYAALPPAWR IGHNASWRSE VLDQRPADWP AWFVEQVARP QWQRGYRGFF
LDTLDSYQLV AATAEERALQ QAGLVRVIRA LRAAFPSARL IVNRGFELLP QVATQVDMVA
AESLYRRWNP VDARYEDVSA DDRAWLLAQF EQVREQHGLP LLAIDYVAPG DRARARELAA
RIAAHGLQPF VVNGALDQLG LGAIEVLPRR VLMLHDAPMQ RASDITYSVI HQYVDMPVFH
LGLIPQHLQV DRDALPDYPL AGRIAGIVTH FDSDRARPAL AAFLKRAIAE GIKVVSLGQP
GVGSGPALAE TFGLQTRPGA PLPLAPVRVS QQGREIGFEL APLPTVAGFR PLAAPPGAQP
LLTLRDARGA TMDAIAFTPW GGYALWGQAL ARLPSRPDEV RWVVDPIAFL RQALALPPMP
VPDLATETGR RLLLAHVDGD GFANFSDQPG SPMASAVLLR EVFERYRVPT TMSVIEGETA
PHGLYPQHAA ELEAIARRIF ALPHVEIGSH SYSHPFNWER AAAARDDGRY RLQLPDYVFD
TEREVAGSIR YIEERLAPAG KKVRLYQWSG NTNPGEAALA AVERAGIGSI NGGETLITRA
QPSLTKVAPP GVRKGAHFQV YAPNQNENVY TNHYTAPLYG YERVIETFEL TGQPYRLKPI
NLYFHTYAAS RQASLEALHK AWRWALAQPV HPVFTSAYVA RVRNFEQVVI ARGADGFLVR
GAQALRQLRA PASLGVPQIA GSRALAGYTE PDAVEGTDGL AGAGERYLHL AADEAWLRFD
RQGDGAPRLV DANGRVEAHE HAGGRTRLRL AAQVPLQFSL RHGPRCTVAA DPQPVTVSAD
PSGLSRYAMD PHGSATITIA CP