Gene Lcho_0011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0011 
Symbol 
ID6160071 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp11932 
End bp12906 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content74% 
IMG OID641662756 
Producthypothetical protein 
Protein accessionYP_001789052 
Protein GI171056703 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.000604844 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCGGACG ACCGATCACC CGACCTGCCC GCACCGCCGC CGGCCCCCGA GCCCGCGCTC 
GCGTTCAAGG CGACGCTGCT GCTGGCGCTG TTCGTCGCGC TGGTGGCGGG CACCGCGCTC 
TACCTGATGT ACGCGCGCGG CACCTTCGAG CCGACCCAGC GCGTGGTGCT GGTGGCCGAC 
GACTCCGAAG GCGTGCGGGT CGGCATGGAC CTGACGTTCT CGGGCTTTCC GATCGGCCGG 
GTGCGCCGCA TCGAGCTGGC CGCCGACGGC AGCGCCCGGG TCGTGATCGA CGTGCCGCGC 
AAGGACGCCC ACTGGCTGCG CGAGACCAGC GTGTTCACCC TCGTGCGCAG CCTCGTCGGC 
GGCGCCAGCC TGAAGGCCTA CAGCGGCGTG CTGACCGACC CGCCGCTGGC CGACGGCGCC 
GAGCGCCGGG TGCTGGTGGG CGACGCCACC GCCGAGCTGC CGCGGCTGGT GTCCGACGCC 
CGTGCGCTGA TCCAGAACCT CACCCAGCTG ACCGCCGCCG ACGGTGCGCT GGCCGGCAGC 
CTGACGCAGG TGCAGACCTT CGCCGAGCGC CTCGCCGGCC CGCGCGGTGC GGTCGGCGCG 
CTGCTCGGCA ACGAGGCCGA CGCGCGCCAG GTCAGCGCCG CGCTGGGGCG TGTCAACACG 
CTGCTGGCGC GGCTCGACGG CATCGCCGTC AAGGCCGACG CGCAGGTGCT CGGCCCCGAC 
GGCGTGGTGC ACGAAAGCCG CGCCGCCATC GGCCAGTTGA ATGCCCTGCT CGGCGACACG 
CGGGCGACGC TGCAGAAGGT CGACGCCCTG CTGGTCGAGG CCCAGGCCAT CGCCGGCAAC 
GCGCGCGAGG CCACCACCGA CCTCGGCGCG CTGCGCAGCG AGGTCGACGC CACGCTGCGC 
AAGGTCGAAC AACTGGTCGA CGAGCTGAAC CGCAAATGGC CGTTCGCGCG CGACACGGAG 
CTGAAGCTGC GATGA
 
Protein sequence
MPDDRSPDLP APPPAPEPAL AFKATLLLAL FVALVAGTAL YLMYARGTFE PTQRVVLVAD 
DSEGVRVGMD LTFSGFPIGR VRRIELAADG SARVVIDVPR KDAHWLRETS VFTLVRSLVG 
GASLKAYSGV LTDPPLADGA ERRVLVGDAT AELPRLVSDA RALIQNLTQL TAADGALAGS 
LTQVQTFAER LAGPRGAVGA LLGNEADARQ VSAALGRVNT LLARLDGIAV KADAQVLGPD 
GVVHESRAAI GQLNALLGDT RATLQKVDAL LVEAQAIAGN AREATTDLGA LRSEVDATLR 
KVEQLVDELN RKWPFARDTE LKLR