Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0008 |
Symbol | |
ID | 6160267 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 8901 |
End bp | 10451 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641662753 |
Product | peptidoglycan binding domain-containing protein |
Protein accession | YP_001789049 |
Protein GI | 171056700 |
COG category | [S] Function unknown |
COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000297379 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAACATCC TGCCCACCGG TCGCCGCCTG GTCTTCGTGC TGTGCATCGC CGTGGCCGGG CTCGGCGGCG CCGGCACGGC CGATGCGGTG ATGGCGTCGG CGTGGTTCGA CGGCGGACGC CCGGGCGCAC AGGCGCAGCA GGCGGTGGCC CTGCTGGCCG ATGCCGCCTC CGACGGCCTG GAGCCGCAGG ACTACGACGC CGCGGCCCTG CAGCGCGCGG TCGCGCTGGC GGCGCAGGGC CCGGGGCTCG ATGCGGCGGC GCAGTCGGGC CTGGGCGATG CCCTGAGTGC GGCGATGCAG CGCTTCCTGG CCGATCTGCA CGACGGGCGC ATCGCCCCGC GGCAGGTCCA CGCCCGCTTC GACGTGCCGC GTGGCGCGGC CTTCGATCCG GCCGCCGTGC TGGGCGCCGC GCTGGCCGGA CAACGCCTGC CGCAGGCGGT GCGCGAGGCG GCGCCGCGCC TGCCGCTGTA CGAGCAGCTG CGCCAGGCGC TGGCGCAGTA CCGCGCGCTC GGCGAGCACC CCGCCTGGGC GCAGAAGCTG CCGCCGCTGC GCGGGCGCAA GCTCGAGCCG CTGCAGGCCT GGGACGGCCT GCCGCTGCTG GCCGGGCGGC TGCAGGTGCT GGGTGACCTT CCGGCCGATG TGCCGGTGCC GGTGCGTCAC GAAGGCGCGC TGGTCGCGGC GGTGCAGGCC TTCCAGCGCC GCCACGGCCT GGGCGACGAC GGCGTCGTCG GCCGCGCCAC GCTGGCCGCG CTGGCCGTCA CCCCGGCGCA GCGCGCCCGC CAGATCGCGC TGACGCTCGA GCGCCTGCGC TGGACGCCGC TGCAGCTGGG CCCGCGCATG ATCGTCGTCA ACGTGCCCGA GTTCGTGCTG CGCGCCTACG AGACCCGCGA CGACCGCATC GACGTCCGGC TCGAGATGAA GGTGATCGTC GGCAAGGCAC TCGACACCCC GACGCCGCTG TTCACCGAGG AGATGCGCTT CATCGAGTTC AGCCCCTACT GGAACGTGCC GCGCTCGATC GCCGGTGCCG AGCTGGTGCC GCGGCTGCAG AGCGAGCCGG CCTACTTCAC GCGCCAGGGT TTCGAGTTCG TCGGCCGCGA CGGCCGGGTC TCGGCCGGCT TCGGCGACGA ACAGCTCGAC GCGGTGCTGC GCGGCGAGCT GCGCATCCGC CAGCGGCCCG GGCCGAACAA CGCGCTGGGC GACATCAAGT TCGTGTTTCC GAACAACGAC GCGATCTACC TGCACCACAC GCCGTCGCCC GGCCTGTTCG AGCGCGACCG GCGCGATTTC AGCCACGGCT GCATCCGCGT CCAGGAGCCG GTGGCGCTGG CGAAGTTCGT GCTGCAGGAT CAGCCCGGAT GGGACGAGGC CCGCATCGTC GAGGCGATGG CGCGCGGCCA ATCGCGCACC CTGCGGCTGG ACCGGCCGGT GCCGGTGCTG ATCGCCTACG GCACGGTGCT GGTCAGGCAG GGGCGGCCGC ATTTCCTGGC CGACGTCTAC GGCAACGACC AGCTGCTCGA CGAGGCCCTG CGCAAGCGTC GCCGGCGCTA A
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Protein sequence | MNILPTGRRL VFVLCIAVAG LGGAGTADAV MASAWFDGGR PGAQAQQAVA LLADAASDGL EPQDYDAAAL QRAVALAAQG PGLDAAAQSG LGDALSAAMQ RFLADLHDGR IAPRQVHARF DVPRGAAFDP AAVLGAALAG QRLPQAVREA APRLPLYEQL RQALAQYRAL GEHPAWAQKL PPLRGRKLEP LQAWDGLPLL AGRLQVLGDL PADVPVPVRH EGALVAAVQA FQRRHGLGDD GVVGRATLAA LAVTPAQRAR QIALTLERLR WTPLQLGPRM IVVNVPEFVL RAYETRDDRI DVRLEMKVIV GKALDTPTPL FTEEMRFIEF SPYWNVPRSI AGAELVPRLQ SEPAYFTRQG FEFVGRDGRV SAGFGDEQLD AVLRGELRIR QRPGPNNALG DIKFVFPNND AIYLHHTPSP GLFERDRRDF SHGCIRVQEP VALAKFVLQD QPGWDEARIV EAMARGQSRT LRLDRPVPVL IAYGTVLVRQ GRPHFLADVY GNDQLLDEAL RKRRRR
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