Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0002 |
Symbol | |
ID | 6161734 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1718 |
End bp | 2863 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641662747 |
Product | DNA polymerase III, beta subunit |
Protein accession | YP_001789043 |
Protein GI | 171056694 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.000030299 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGATCGTCC TGAAAGCAGC GCAGGAACAG GTTCTGGGCG CCCTGCAAGC GGTTTCCGGC ATCGTCGAGC GACGCCACAC CCTTCCGATC CTGGCCAACG TGCTGATCCG CAAGAGCGGC GGCCGCACCG AACTGACGAC CAGCGACCTG GAAATCCAGG TCCGCACCGC CGCCGAACTG GGTGGTGACG AAAGCGCCTT CAGCACCACG GTCGGCGCGC GCAAGCTGAT CGACATCCTG CGCATGCTGC CGTCCGACCA GATCGTGACG CTGACCGCGG CGCAGAACAA GCTCACGCTG CAAGGCGGCA AGAGCCGTTT CACGCTGCAG ACGCTGCCGG CCGACGACTT CCCGCTGGTG CAGGAAGCCG CCGACTTCGG CCCCGCCTTC AGCGTGCCGC AGAAGACGCT CAAGAGCCTG ATCGACCAGG TGCACTTCGC GATGGCGGTG CACGACATCC GCTACTACCT CAACGGCATC CTGTTCGTCG CCGAAGGCAA GACGCTGACG CTGGTGGCCA CCGACGGCCA CCGCCTGGCG CTCGCCCAGG CCACGCTCGA AGCCGAGATC CCGAAGCAGG AGGTGATCCT GCCGCGCAAG ACCGTGCTCG AACTGCAGCG CCTCTTGAAG GACGACAAGG CCAGCAAGGA AGCCGCCAAG CAGGAAGGCG CCGAAGAGCC GCGCATCGAG ATGCGCTTTG CCGACAACCA GGCCAAGTTC AGCTTCGGCG GCATGGAGTT CGTCACCAAG CTGGTCGAGG GCAAGTTCCC CGACTACAAC CGCGTCATCC CGCGCAACCA CAAGAACCAC GTCACGCTCG GCCGTGCGCC GCTGCTGGCC AGCCTGCAGC GCGCCGCGAT CCTGACGAGC GAGAAGTTCA AGGGCGTGCG CGTCAACTTC GAGCCCGGCA CCTTGCGCAT CGCCTCCAGC AATGCCGAGC AGGAAGAAGC CAAGGAAGAG CTCGAGATCG ACTACGGCGG CGACGCCATC GAGATCGGCT TCAACGTCAC CTACCTGATG GACGTGCTGG CCAACGTCAA CGAGGACATG GTGACGCTGT CGCTGCAGGA CGCCAGCAGC TCGGCGCTGA TCACCGTGCC CGAGCGCAGC GGCTTCAAGT ACGTCGTGAT GCCGATGCGG ATTTGA
|
Protein sequence | MIVLKAAQEQ VLGALQAVSG IVERRHTLPI LANVLIRKSG GRTELTTSDL EIQVRTAAEL GGDESAFSTT VGARKLIDIL RMLPSDQIVT LTAAQNKLTL QGGKSRFTLQ TLPADDFPLV QEAADFGPAF SVPQKTLKSL IDQVHFAMAV HDIRYYLNGI LFVAEGKTLT LVATDGHRLA LAQATLEAEI PKQEVILPRK TVLELQRLLK DDKASKEAAK QEGAEEPRIE MRFADNQAKF SFGGMEFVTK LVEGKFPDYN RVIPRNHKNH VTLGRAPLLA SLQRAAILTS EKFKGVRVNF EPGTLRIASS NAEQEEAKEE LEIDYGGDAI EIGFNVTYLM DVLANVNEDM VTLSLQDASS SALITVPERS GFKYVVMPMR I
|
| |