| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0002 |
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| Symbol | |
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| ID | 6161734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1718 |
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| End bp | 2863 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641662747 |
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| Product | DNA polymerase III, beta subunit |
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| Protein accession | YP_001789043 |
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| Protein GI | 171056694 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
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| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.000030299 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATCGTCC TGAAAGCAGC GCAGGAACAG GTTCTGGGCG CCCTGCAAGC GGTTTCCGGC
ATCGTCGAGC GACGCCACAC CCTTCCGATC CTGGCCAACG TGCTGATCCG CAAGAGCGGC
GGCCGCACCG AACTGACGAC CAGCGACCTG GAAATCCAGG TCCGCACCGC CGCCGAACTG
GGTGGTGACG AAAGCGCCTT CAGCACCACG GTCGGCGCGC GCAAGCTGAT CGACATCCTG
CGCATGCTGC CGTCCGACCA GATCGTGACG CTGACCGCGG CGCAGAACAA GCTCACGCTG
CAAGGCGGCA AGAGCCGTTT CACGCTGCAG ACGCTGCCGG CCGACGACTT CCCGCTGGTG
CAGGAAGCCG CCGACTTCGG CCCCGCCTTC AGCGTGCCGC AGAAGACGCT CAAGAGCCTG
ATCGACCAGG TGCACTTCGC GATGGCGGTG CACGACATCC GCTACTACCT CAACGGCATC
CTGTTCGTCG CCGAAGGCAA GACGCTGACG CTGGTGGCCA CCGACGGCCA CCGCCTGGCG
CTCGCCCAGG CCACGCTCGA AGCCGAGATC CCGAAGCAGG AGGTGATCCT GCCGCGCAAG
ACCGTGCTCG AACTGCAGCG CCTCTTGAAG GACGACAAGG CCAGCAAGGA AGCCGCCAAG
CAGGAAGGCG CCGAAGAGCC GCGCATCGAG ATGCGCTTTG CCGACAACCA GGCCAAGTTC
AGCTTCGGCG GCATGGAGTT CGTCACCAAG CTGGTCGAGG GCAAGTTCCC CGACTACAAC
CGCGTCATCC CGCGCAACCA CAAGAACCAC GTCACGCTCG GCCGTGCGCC GCTGCTGGCC
AGCCTGCAGC GCGCCGCGAT CCTGACGAGC GAGAAGTTCA AGGGCGTGCG CGTCAACTTC
GAGCCCGGCA CCTTGCGCAT CGCCTCCAGC AATGCCGAGC AGGAAGAAGC CAAGGAAGAG
CTCGAGATCG ACTACGGCGG CGACGCCATC GAGATCGGCT TCAACGTCAC CTACCTGATG
GACGTGCTGG CCAACGTCAA CGAGGACATG GTGACGCTGT CGCTGCAGGA CGCCAGCAGC
TCGGCGCTGA TCACCGTGCC CGAGCGCAGC GGCTTCAAGT ACGTCGTGAT GCCGATGCGG
ATTTGA
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| Protein sequence | MIVLKAAQEQ VLGALQAVSG IVERRHTLPI LANVLIRKSG GRTELTTSDL EIQVRTAAEL
GGDESAFSTT VGARKLIDIL RMLPSDQIVT LTAAQNKLTL QGGKSRFTLQ TLPADDFPLV
QEAADFGPAF SVPQKTLKSL IDQVHFAMAV HDIRYYLNGI LFVAEGKTLT LVATDGHRLA
LAQATLEAEI PKQEVILPRK TVLELQRLLK DDKASKEAAK QEGAEEPRIE MRFADNQAKF
SFGGMEFVTK LVEGKFPDYN RVIPRNHKNH VTLGRAPLLA SLQRAAILTS EKFKGVRVNF
EPGTLRIASS NAEQEEAKEE LEIDYGGDAI EIGFNVTYLM DVLANVNEDM VTLSLQDASS
SALITVPERS GFKYVVMPMR I
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