| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5938 |
|---|
| Symbol | |
|---|
| ID | 6128742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 3132329 |
|---|
| End bp | 3133198 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641653022 |
|---|
| Product | HrpE/YscL family type III secretion apparatus protein |
|---|
| Protein accession | YP_001779549 |
|---|
| Protein GI | 170738289 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0582913 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCT GGCTGAGACA ACCGGGCACC GAACAGGCCG CACGCGCGTG CAACACGGGC
GTCGGCGTGC ACGCCGACGT CGTGCCGCGC GAGGCCCTGG CGTCGCTGGT GCAACTCGAC
GCAGGCTATC TCGCGTTGCA GCGCCAGCAC GCGGAAGTCC TCGCGCAAGC GGCGCGCGAT
GCCGACCGCA TGCTTGCGGC GGCCCGCGCG GACGCGGACG CGCTGCGCAC CGAAGCCCGC
GACGAGTACG ATACCGCGCA GCAGCGCGGT TACGACGCAG GGAGTCGCGA TGCGCTTTCG
CAATGGTACG CGCGCACCGC GCAGTTGCTC GATCAACGCT ACGAACTGCA GATGTCGTTG
AAGCAGCGCA TCGCCGGGCT GGTGGTATCC GCGGTCGAGA AGATCGTCGC CAACGAACAG
CCGGCGGCAT TGTTCACCCG CGCCGGCGAC GTGGTCGAAC GCATCATCGA AGGCAGCCGC
ACCCTGCAGG TTCGCGTGCA TCCGGACGAG CACGACGCGG CCGTCGAAAC CTTCTCGCAT
GCGGTGGCGC AGTGGCGCGC GCGCGGCCAG CCGGTCCAGT TGACGGTTCA TGCGGACCGC
ACGCTCGACC GCGGCGCGTG CGTGTGCGAC ACCGACATCG GTTCGGTCGA CGCGAGCCTC
AAGGTACAGA TCGACGCGGT CCGCATGGCG GCCGACGCGG CGCTGCGGCG CGACGCGAAC
GCGCCGGACG TGCCGGATAC GCTCGCACCG GAGGCGTTCG CCGAAGTCAG GACGCATGCG
GCAGCGCCCG GGTTGCCGGA ACCGCCGGAA CAGGAAGCGG AAGCCGCAAG CGGCACGGGC
CCCACCGAGG ATGTCGGAGT GCAGGCATGA
|
|---|
| Protein sequence | MIIWLRQPGT EQAARACNTG VGVHADVVPR EALASLVQLD AGYLALQRQH AEVLAQAARD
ADRMLAAARA DADALRTEAR DEYDTAQQRG YDAGSRDALS QWYARTAQLL DQRYELQMSL
KQRIAGLVVS AVEKIVANEQ PAALFTRAGD VVERIIEGSR TLQVRVHPDE HDAAVETFSH
AVAQWRARGQ PVQLTVHADR TLDRGACVCD TDIGSVDASL KVQIDAVRMA ADAALRRDAN
APDVPDTLAP EAFAEVRTHA AAPGLPEPPE QEAEAASGTG PTEDVGVQA
|
|---|
| |