Gene Bcenmc03_5537 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_5537 
Symbol 
ID6128347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010515 
Strand
Start bp2680585 
End bp2681787 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content71% 
IMG OID641652627 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001779154 
Protein GI170737894 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.168619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTCCT TTTCCCTACG CAGAACCTCG CCATTGGGCG CGGCCTGCGC CCTGTTGCTG 
GCGTTGTCGG GCTGTCACGA CGGCAAAGGC ACATCGTCGG CCCAGCCGCT TCCCGAAGTG
GGCGTCGCCA CCGTCGCGCC GCGTACCATC CGCCTCGCGG ACGAATTCAA CGGGCGCGTC
GAAGCGGTGG ACGCCGTCGA ACTGCGGCCG CGCGTGAGCG GCTACCTGCA GCGTGTCGCG
TACAAGGAGG GCGACGTGGT CGCGCAGGGC GCGTTGCTGT TCGAGATCGA TCCGCGCCCG
TACCGGATCG CGCTCGACCG GGCGAATGCG CAGCAGCAGC GCGCCCGCGC GGCCGCGAGC
CTCGCGAACG TGCAGTTGAA GCGCGTGCAG ACGCTGATCG ACGCGCATGC GACGTCGCAG
GAAGAACTCG ACAACGCGCG CGCCACCGCG GAGCAGGCGC GTGCCGATCT GCAGGCGGCC
GATGCGGCCG TGGCCGACGC GAAGCTCAAT CTCGGCTTCA CCGAAGTGCG CGCGCCGATC
GCGGGCCGGG TCGGCCGTGC GGTCGCGACC GTCGGCAACC TCGCGCGGGC GGACGACACG
CTGCTGACGA CCGTCGTGTC GCAGGACCCC GTCTACGTGT ATTTCGATTG CGACGAGCAA
AGCTACCTGC GCTACAACGC GCGGCGCGCC GATCCGACGC ATCGCGCGAT CGGCGCCGAC
CCGGTGCGCG TCGGCCTCGC GAACGAGACG GGCTTCCCGC ATGCGGGCAC CGTCGATTTC
CTCGACAACC GGCTCGATCC GCAAACCGGC ACGATCCGCG CCCGCGTGCG GCTGCCGAAT
GCGGACCATA CGTTCACGCC GGGCCTCTAT GCGCGCGTGC AGCTCGTCAG CGGCCGCGAC
CAGGACGCTT TGCTGGTCGA CGACAAGGCG GTGCTGACCG ACCAGGACCG CAAGTACGTA
TACGTGATCG GCCCGGGCGA CAAGGCGCTG CGCCGCGACG TGACGATCGG CCGCGAACTC
GACGGCGAGC GGATCGTCGA GAAGGGGTTG CAGTCGGGCG ACCGCGTGGT GGTGGACGGC
GTGCAGCGCA TCTACTATCC GGGCGCGCAG GTGAAGCCGA AGGCGCTGCC CGCACGCGCC
GCGGCGGACC CCGGCGCCGG CACGCAGGCC GTGGCCGATG CCGGCGCGCC TGCCGCGCAC
TGA
 
Protein sequence
MLSFSLRRTS PLGAACALLL ALSGCHDGKG TSSAQPLPEV GVATVAPRTI RLADEFNGRV 
EAVDAVELRP RVSGYLQRVA YKEGDVVAQG ALLFEIDPRP YRIALDRANA QQQRARAAAS
LANVQLKRVQ TLIDAHATSQ EELDNARATA EQARADLQAA DAAVADAKLN LGFTEVRAPI
AGRVGRAVAT VGNLARADDT LLTTVVSQDP VYVYFDCDEQ SYLRYNARRA DPTHRAIGAD
PVRVGLANET GFPHAGTVDF LDNRLDPQTG TIRARVRLPN ADHTFTPGLY ARVQLVSGRD
QDALLVDDKA VLTDQDRKYV YVIGPGDKAL RRDVTIGREL DGERIVEKGL QSGDRVVVDG
VQRIYYPGAQ VKPKALPARA AADPGAGTQA VADAGAPAAH