Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_5430 |
Symbol | |
ID | 6128240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | + |
Start bp | 2555763 |
End bp | 2557808 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641652520 |
Product | YscC/HrcC family type III secretion outer membrane protein |
Protein accession | YP_001779047 |
Protein GI | 170737787 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.128772 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.061937 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCGAC GCGTCGCCTC GATCCGGTTT CAACCGCGCA GCCTGCAACG GGCCGCGCTT GCCGTGTGCG CGACCGCGCT GCTCACGGCG TCGCTGTGCA TGGCGCCCGC GCAGCATGCG CGCGCCGCGG ACCTGCGCTG GCGCAACAAG CCGTTCACGA TCGTCGCGAA CGGCAAGAAG ATCGGCGACT TCATTCGCGA GCTCGCGTCG TCGCAGGGCG TGACGGCGGT GGTCGACCCG AAGGTCGACG GCGTGATCAG CGGCCGCTTC TCCGGCACGC CGCAGCAGAC GCTCGACACG ATCTGTTCCA CCTACGGGCT CACGTGGTAC TACGACGGTT CGTTCCTGTA CGTCGATCCG GCCGACCAGT CGCAGACGCA GATGATCCCG ATCCCGCCGA ATGCGTCCGG CGAAATCGGC CGCGCGCTGC AGGCGATGCA GATTCCGGAC AAGCGCTACA CGCTGGTCAT CAACGACCGC GCGAACAGCG TGTACGTGGC CGGCCCGCGC CGCTATGTCG AGCTCGTGCG GCAGGCGGTC GGCTCGGTCG GCGACCCGGC GGCGAACGGC GCGCATGCGG ACATCCGCGC GTTCCGCCTG AAATACGGCT GGGCGTCGGA CTTCACGATC AACCGCTCGG GCAAGGAAGT GACGGTGCCG GGCGTCGCGA CGATCCTGCG CCGGCTGTTC GGCAAGGGCG GCGGCACGAC CGCGGCGCCG TCGAGCACGC CGCTCGGGCA GGCCGCGCGC CAGGTGAAGC TCGGCTCGGG CCTGACGATC GCGGTGCCGC GGCTCGACTT TCCCGACATC TCGGGCGGCC CGCGGCAGGG CGGTTATGGC GGGGCGGACA GCGGCATGGG CGGCGGCTTC TCGCCGTTCG CGAACAACGG CGGCGGCGAC ACGCTGCCGC AGATCGTCGC CGATCCGGCG ATCAACGCGG TGATCGTGCG CGACCTGCCG GAGAACATGT ACCGCTACCA GTCGCTGATC AGTCAGCTCG ACGAGCGGCC GCGCATCGTC GAGATCAACG TGACGATCAT CGACATCAAC GAGGATTCGC TCGACAGCCT CGGGATCGAC TGGCGCCTGC ACACGACGCA CGGCGACGTG CAGATCGGCA ACGGCCAGAA CGCGCTGAAC GGCAACACGC AGTACAACGG CGTCGGCAAC CCGCCGCTGA CGTTCGGCAT CGGCACGTCG GAAACCGGGC AGACGGGCAC CTTCATGCCG ACCGGCATCG CGCTGACCGC ATCGATCGGC GGGTCGCTGC GCAACTACCT GCTCACGCGC GTGAACGCGC TCGCGCAGAA AGGCCAGGCG CAACTGCGAT CGAAGCCGAA GGTGCTCGCG CTCGACAACA CCGAGGCGAT CCTCGAGAAC CTCACGCAGT TCTACGTGCA GGTGCCGGGC TATCAGGATT CGTCGCTGTA CAGCGTGACG ACCGGCACCA GCATCAAGGT GACGCCGATG ATCGTCGACG AGGCGATCCG CAACGCGGCG GCGGTGTCGG GCAACCCGCA GAGCGTGATG ATGTCGATCG ACATCCAGGA CGGCAACATC GTGCCGGGGC AGGCCGTGTC GAACGTGCCG GTGATCCAGC AGCGCAACAT CGTCACCAAG ACGATGATCG ACGAAGGCAA GAGCCTCCTG ATCGCCGGTT TCAACGACGA CGAGGTGAAG CTGAACAAGA GCGGCGTGCC CTGGCTGTCC GACATCCCGC TGATCGGCAA CCTGTTCAAG TACACCGACA AGTCGGGCAA CCACATGGAG CGGTTCTACC TGCTGACGCC GCGGGTCGTG ACGAACGCGT CGATGTACGC GCCGGACGGC TCGCCCGTGA ACCCGGGTGT CGATGGGCCG GCGAGCCAGG AAGGGATGTC GATGTATCGG CCGCCCGACA ACGACGTCGC GGTGCCGCTG ACGCCGAAGC CGCTGCCCGG CACGAAGTTC GGTCCGCCCG CGTTGCCGGC GCCACCCAAG GATGCGGCGT CGCAGCCGGT GGCGACGACC GCAGGAGCAC CCACCCATGT CGACGAGCAT CATTGA
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Protein sequence | MRRRVASIRF QPRSLQRAAL AVCATALLTA SLCMAPAQHA RAADLRWRNK PFTIVANGKK IGDFIRELAS SQGVTAVVDP KVDGVISGRF SGTPQQTLDT ICSTYGLTWY YDGSFLYVDP ADQSQTQMIP IPPNASGEIG RALQAMQIPD KRYTLVINDR ANSVYVAGPR RYVELVRQAV GSVGDPAANG AHADIRAFRL KYGWASDFTI NRSGKEVTVP GVATILRRLF GKGGGTTAAP SSTPLGQAAR QVKLGSGLTI AVPRLDFPDI SGGPRQGGYG GADSGMGGGF SPFANNGGGD TLPQIVADPA INAVIVRDLP ENMYRYQSLI SQLDERPRIV EINVTIIDIN EDSLDSLGID WRLHTTHGDV QIGNGQNALN GNTQYNGVGN PPLTFGIGTS ETGQTGTFMP TGIALTASIG GSLRNYLLTR VNALAQKGQA QLRSKPKVLA LDNTEAILEN LTQFYVQVPG YQDSSLYSVT TGTSIKVTPM IVDEAIRNAA AVSGNPQSVM MSIDIQDGNI VPGQAVSNVP VIQQRNIVTK TMIDEGKSLL IAGFNDDEVK LNKSGVPWLS DIPLIGNLFK YTDKSGNHME RFYLLTPRVV TNASMYAPDG SPVNPGVDGP ASQEGMSMYR PPDNDVAVPL TPKPLPGTKF GPPALPAPPK DAASQPVATT AGAPTHVDEH H
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