| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5333 |
|---|
| Symbol | |
|---|
| ID | 6128143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 2451191 |
|---|
| End bp | 2452384 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641652423 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001778950 |
|---|
| Protein GI | 170737690 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.037024 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGA AGACCCATCG CCGCCGGCGC ATCGTGCTGG CTACCCTTGC CGTCGTCGCG
ATCGCCGTCG GCATCACGCT GAAGGCCTGC GCGCCGACCA AGCATCCGCA ATACCTTTCC
GCGCCGGTCA CGCGCGGCGA TCTCGAGAAC GCGGTGCTCG CGACCGGCGC GCTGCAGGCG
TTCAGGCAGG TTGACGTCGG CGCGCAGGTG TCGGGGCAAT TGAAGACGCT GAAGGTCAAG
CTCGGCGACA AGGTCACGAA GGGCCAGTGG CTCGCCGAGA TCGACCCGGT GATCTCGGAA
AACGCACTGC GCCAGGCGCG CGCCAGCGAA GAAAGCCTGC GCGCGCAGCA ACGATCGACC
GCCGCACAGT TGACGCAAGC CGAACTCGCG TTCCGCCGCC AGCAGGCGAT GCTGCCCGAC
GATGCGACGT CGCGCGAATC GTTCGAAGCC GCGAAGGCGA CGCTCGACGT GCAGCGCGCG
ACCCTCGCGT CGCTCGCCGC GCAGATCCGT TCGGCCCGCA TCCAGATCGA GACCGCACAA
GCCAACCTCG GCTACACGCG CATCGTCGCG CCGATCGACG GCGAGGTCGT CGCGATCGTC
ACGCAGGAAG GCCAGACCGT GATCGCGCAG CAGCAGGCGC CGGTGATCCT GAAGCTCGCG
AATCTCGACA CGATGACCGT GAAGGCGCAG GTGTCGGAAG CGGACGTGAT CCGCGTGAGC
GCCGGCCAGA CCGCTTATTT CACGATTCTC GGCGAACCGG ACAAGCGTCA CTACGGCAAG
CTGCGCGCGA TCGAACCGGC ACCGCAGAAC TACGCCGACG CGCAAAGCGC GCTCGGCGGA
GGGGCCGGCG GCGGCGCGAA GCCGAACGCC GCGGTGTTCT ACAACGCGCT GTTCGACGTG
CCGAATCCCG AGCACCGGCT GCGCATCGCG ATGACCGCGC AGGTCAACAT CGTGCTCGGC
AACGCGCGCA ACGCGCTCAG CATCCCGGCC GCCGCGCTCG GCGAGAAGCG CAAGGACGGC
ACCGTCGCGG TACGCGTGCT GCGCGCCGAC GGCAGCACGG AAACGCGCCA CGTCCGCATC
GGCATCAACA ACAACGTGCG CGTCGAAGTA CTGGCCGGCC TGAAGGACGG CGAGCGTGTC
GTGATCGGCG AAGCGTCGGC GGACGAGCGC GCGCCGCTGT CGGACGTGGT GTAA
|
|---|
| Protein sequence | MTQKTHRRRR IVLATLAVVA IAVGITLKAC APTKHPQYLS APVTRGDLEN AVLATGALQA
FRQVDVGAQV SGQLKTLKVK LGDKVTKGQW LAEIDPVISE NALRQARASE ESLRAQQRST
AAQLTQAELA FRRQQAMLPD DATSRESFEA AKATLDVQRA TLASLAAQIR SARIQIETAQ
ANLGYTRIVA PIDGEVVAIV TQEGQTVIAQ QQAPVILKLA NLDTMTVKAQ VSEADVIRVS
AGQTAYFTIL GEPDKRHYGK LRAIEPAPQN YADAQSALGG GAGGGAKPNA AVFYNALFDV
PNPEHRLRIA MTAQVNIVLG NARNALSIPA AALGEKRKDG TVAVRVLRAD GSTETRHVRI
GINNNVRVEV LAGLKDGERV VIGEASADER APLSDVV
|
|---|
| |