| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5298 |
|---|
| Symbol | |
|---|
| ID | 6128108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 2412245 |
|---|
| End bp | 2413486 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641652387 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001778915 |
|---|
| Protein GI | 170737655 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0624321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCCG CTTCGATTTC CCGTTCCATG CCCGGCACGC AGAACGCCGC ACCCGATGCG
CTGCCGGCCG GCGTGTCCCC GCGCTCGGCC GCGTACAAGC GCATCGCGTT CGCGCTATTC
CTCGCCGGCT TTTCCACTTT CTCGCTGCTG TACTGCGTGC AGCCGCTGCT GCCCGCGTTC
GCCCATGAGT TCAACGTCGG CGCGGCATCG AGTTCGCTCT CGCTGTCGTT GTCGACCGGA
ATGCTCGCGG TGTCGATCCT GTGCGCCGGC GCGCTGTCCG AACGGGTCGG GCGGCGCGGG
CTGATGTTCG TGTCGATGAC GCTGGCCGCG CTGTTCAACC TGCTCGCCGC GTGGTCGCCG
AACTGGCACC TGCTGCTGGT CTGGCGCGCG CTCGAAGGCT TCGCGCTGGG CGGCGTGCCG
GCCGTGGCGA TGGCCTATCT CGCGGAAGAA ATCGCCGCCG ACGGGCTCGG CTTCTCGATG
GGGCTCTATG TCGGCGGGAC CGCGTTCGGC GGCATGATCG GACGGATCGG GATGAGCGCG
CTCGAGGAGC ACTTCTCGTG GCGCACGGCG ATGCTGTCGA TCGGCGTCGT CGACCTGCTC
GCGGCGATCG CTTTCGTGAT GCTGCTGCCG GCCTCGCGAC GCTTCGTGAA GCGCACCGAC
CTGACGCTGC GTCACCACCT AAGGCTGTGG CACGCGCAAC TGCGTCATGC GCGCCTGCCG
TTCGTGTTCG CGATCGGCTT CCTCGTGATG GGCGCGTTCG TGACGATCTA CAACTACGCC
GGGTTCCGGC TCATGGCGGC GCCGTTCAAC CTGAGCCCGA CCGCGTGCGG GCTGATTTTC
GGCGCATACC TGTTCGGGAT GGTGTCGTCA TCGAGCGCCG GCGCGCTCGC CGATCGCCTC
GGGCGGGCGC CGGTGCTGGT CAGCGGCATC GTCGTGTTCG CGGCGGGCCT CGCGCTGACG
CTGTCGCACT CGCTCGTCGC GATCGTCGTC GGCATCGTGC TCGTGACGAT CGGCTTCTTC
GTCGCCCACT CGGTCGCGAG CGGCTGGGTC GGCGCGCTCG CGGGCGCCGC GAAGGGGCAT
GCGGCTTCGC TGTATCTGCT GGCCTACTAC GTCGGGTCGA GCGTGCTCGG CTCGGTCGGC
GGCGCGTTCT GGCAACGCGG CGCGTGGACG AGCGTCGCCG CGTACGTCGC GGTGCTGCTC
GTCATCGCAT TGCTGGCCGC GCGGCGCTTG AGTCGTGCTT GA
|
|---|
| Protein sequence | MSSASISRSM PGTQNAAPDA LPAGVSPRSA AYKRIAFALF LAGFSTFSLL YCVQPLLPAF
AHEFNVGAAS SSLSLSLSTG MLAVSILCAG ALSERVGRRG LMFVSMTLAA LFNLLAAWSP
NWHLLLVWRA LEGFALGGVP AVAMAYLAEE IAADGLGFSM GLYVGGTAFG GMIGRIGMSA
LEEHFSWRTA MLSIGVVDLL AAIAFVMLLP ASRRFVKRTD LTLRHHLRLW HAQLRHARLP
FVFAIGFLVM GAFVTIYNYA GFRLMAAPFN LSPTACGLIF GAYLFGMVSS SSAGALADRL
GRAPVLVSGI VVFAAGLALT LSHSLVAIVV GIVLVTIGFF VAHSVASGWV GALAGAAKGH
AASLYLLAYY VGSSVLGSVG GAFWQRGAWT SVAAYVAVLL VIALLAARRL SRA
|
|---|
| |