Gene Bcenmc03_5261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_5261 
Symbol 
ID6128072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010515 
Strand
Start bp2362974 
End bp2367437 
Gene Length4464 bp 
Protein Length1487 aa 
Translation table11 
GC content62% 
IMG OID641652352 
ProductYD repeat-containing protein 
Protein accessionYP_001778880 
Protein GI170737620 
COG category[M] Cell wall/membrane/envelope biogenesis
[S] Function unknown 
COG ID[COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01643] YD repeat (two copies) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.792751 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGACA CGCCGAACTA CAACGAGCCG AGCGGCAGCG CCCAGGAGCG TCTCGATCAG 
ATCGCCGGGC TGGAGGACGG TGAAGCCGCG AAAGCGGCCG AGCAGCCGTT TTACGAGCAC
CTCAACTACG GGATGCTCGG CGCCGATGCG GGCCTGACCG CCGTCGAGGG GACGGCCGCC
GGGCTGGGTG CCGCCGGTAC GGCGCTCGCG GGTGGGGCGA CCGGCGGGGC GGCACTGGGC
GCGGGCGCGA TTGCGGCGGG CACCGTCATG CTTCCGCTGG CGATTGCGGT CGGCGGTGCG
TGGGCGCTCG ACAAGGTTGG CGTGACCGGC TGGCTATCGA AGGAATTCAC GCAGGTTGGC
GACGCGCTCG GCCTCACGAT CGGCCGCGGC GATCCGCATC CCGCCTGCAT TGGCGATCGG
ATCGCGCACT CGTCGGGTTT TATGGGGATT CTCGCCGGCA TTGCCGTGGG GGTCGCGATT
GGCGTGGCAG TGGCGGCGAC CGTGGCAACC GGTGGACTCG CCGGTGCGCT GATCGTCGGC
GCGTGCATGG CGGGCGGCCT GACGCTGGGG AGTGCGCTCG CGTCGGCGAG CCAGAGCATG
GGCAGCAACT GTGGCGAGAT CGTCACCGGT TCGAGCAACG TGTACTTCGA AGGCAAGAAG
GTGGCGCGTG TCACGGACCT GGTGAAATGC GATCACCATT CCGGCGTGCC GCAGGCACTC
GTCGACGGCA GCAAGACCGT GTTCGTCAAC GGCCTGCCGC TGGTGCGGAT CGGCCACGAA
ACGCACTGTA GCGGCAAGGT CAATTCGGGG CGCAACAGCA TCTGGATCGA CAAGACGACT
GGACACTACG GTCCGAAGAA CCCGGAGTTG TCCGCGACTC AGGAATTCCT GGCGGGTTTG
CTCGGCGGGA TCGTAGGAGG CGGAGTCGGA AAATTTGCCG GCAAGGGGCT GCGGGGGTTG
CGCGAAAAAT TCAAGCCCGA GCCCACCCGA TCCGCGGAAC AGAAGGGCAT CAAGGACGAG
AACCGGCCGA CGTGCAAGGA CCCGGTTGAT CCTGTGTCCG GAGAAATGCT CGAGATCCGT
ACGGATCTCG TCATTCCCGG CATCCTGCCT CTCGAGTTCA AGCGACGCTA TCGGACTCGA
TCGGACGACC GCGGATTGCT CGGTCACCGC TGGTCGGACA ACTGGTCGCA GCAACTGACG
TTCGATGGCG GCCGCTTCGT GAGATTCCAC GACGGCGCCG GCCTGGTGAT CGGCTTTGAC
GCGCCGGATA TGGCGCTCAA CGGCATCAAC TTGCGCGAGC CGCGTTATCG GCTGGTCGGA
AGCCGGCTCG AACCGCGCAT CTTCGATCGC GATACGCGGC AACTGCGTAT TTTCGCGCCG
CTCGTCGATG GGCGTTCGTC TCGCCTCGAA CGGATCGAGG ACCTCGACGG TAACGCAATC
GTTCTCTCGT ACGATATTGC CGGACGTTTG AGTGGTATGG CCCATAGCGA CGGCTATCGG
CTCGAGATTG TTTGTCACGG GCGCGACCGA CGGCTGGAAC GGATCGTTCT TCACGATGCG
GACGGCAGGT CCCGGACACT CGTGGACTAC GACTACCAGA ACAGCATGCT TACCCACGTG
GCGAGCTTCC AGTTTGGCCA GTTCTACTAC GCGTATGACG AACACGGCTG GATGACCCAG
TGGCGGGATA CGGACCAGAC GGACGTTCGA TATCGGTACG ACACCGCTGG TCGTGTCGTC
GAGACCGGCA CGCAGCAGGG TTATCACACA GGTCGGTTCA TCTACGAGGC CGGTCGCACA
CGGGTGATCG ATGTCGACGG AGAATGGACC TACGACTATG ACGATGAGGG TCTTGTAACG
GCCGAAACCG ATCCGCTCGG CCATTGCACT CGCTCCGAAT GGGAGCTTGG TCGCTTGATG
GCTCGGATCG ATCCGCTGGG TCGACGGACG GACTATCGCT ATGACGATCG AGGCCAACTG
ATTTCGGTTA CAGACAGTTC GGGGCGCACG ATTGGCTTTG AATATGATGA CGCGCAGTTG
CTCATTGCGA CGAGTTTGCC GAACGGCGGC CGGACCAAGT TCGAGTACGA TCACCTACGC
CGGTTGATTG CGCGTACCGA GTCGGATGGT ACTAAGACGA CCTACCGCTA CGGCCCGCAC
GGCGAATTGC TGCGTATCGT TGCCGGCGAG AGCGAAACCC GCCTCGACTA CGACGACCGG
TTGCGACTCA CCGATATCGC ACTGCCGACG GGTGCGCGCT TCCGGCGCAA GGTCGACCTG
CTGGGGCGGA TACTGGAGGA AACATCGCCC GACGGGCATG TGAGCCGCTT TGACTATACC
GACGGTCCGG ACAATCCGCG TGGCCATCTA AGAGCGATCA CGCGCCCCGA TGGCACGATC
TTGGAAGCGC GATACAACAG CGAGGGCTTA CCGGTCGAGT GGATTGATCC GCTCGGGCGC
ACAACACAGC GAACCTATGG CCCCTTCGAC CTGCTGACGG CATCGACCGA TGCCGCTGGT
CATGTCACGC GTTTCGAGTA CGACCACGCG ACGCGATTGA CAAAGGTCGT CAACGCACTG
GGCGAAGCTT ACACCTACCG CTACGATGCG GCTGGGCGGC TCGCGGCTGA AATCGATTGG
GGCGGCCGCA CGACCCAATA CGAGCTGGAC GCTGCCGGCC GCCTCCTCGC GAAAACGCTG
CCTGACGGCG GGCAGTGGCA TTACACGTAC GATGGTTTCG ATAGGCTCGT CGAGGTCAAT
GCAGGAGACG TCACGCTTGC GTACCGCTAC GACGCACGTG GACGACTGGA ATCGGCGGAG
GTGCTAGGTG AGCACGCTCA CGTGACCCGC TTTGCTTACG ACCGATACGG ACGATTGATT
GGCGAGGACC AGCACGGCGA ACTGCTGCGA CACGTCTACG ACGCTGACGG GCAGCGGCGT
CTGCGGATTA CGCCGCGGCG GGAGACGCCC TACGCGTACG ATGCGCTCGG CACGCTGACG
CAGGTTGGAG GGCTGACGGT CCAGCGCGAC GGCCTAGGAC GCCAGATTGG TCGGCAAGCA
GGGACGTTTG TTACGCAGCA GCAGTACGAC GAGCTTGGTC GGATCCGCCG CCTGATCGCG
GGACCCGCCG CTGCGTTCGA TGCCTTGCAA GACGAACCGG CCCGTGCGCT CGAGCAATTG
ACACGCCAGA TCTATCACTA CGACGCCGCC GGACAGCTGG AGTGCATTGA CGCCGACGTC
GATACGCTCA CGTATCGGCG CGACGTGCGC GGCCAAATCG TCTCAGCGGA AAGTTTGCTA
CAGCCGGCGG AGCACTTCGG TTACGACGCA GCGATGAACA TCGCCGCGCA CGGGCGGCAA
GCCCCGGTAG ATGCTCACCA TTACTACCGG GGTGGCCTGC CGGAACGGGT CGGCTACGCG
CGCTATCGAT ACGATGCACG AGGTCGCACG ATCGAAAAGA CGATTGAACA GCCCGGGTTT
CGGCCAAAGG CGTGGCAGTA CACGTGGGAT GGGCTCAACC GGCTCGTGAA GGTCGTGACG
CCCGAACGCG GCGTTTGGCT GTATCGCTAC GACGCCTTCA ACCGCAGGGT CGAGAAGCAA
CAACTCGGTA GTCGCGAGGC GGTGAAGTTT CTGTGGGACG GCTCGACGCT GGCGGAGCGC
TGGATCGAGC AGCGGGACGG TACGACTGGT CAGGTTGTAA CGTGGCATAT CGAGCCGGGC
AGTTTCTCGC CGCTCGCGCA GGAGACCGAG GACGGTCTAT ACGCGATCCT GACTGACCAG
ATTGGCCTAC CGAAGGCGAT GTTCGATGAA CACGGCAAGC CTGTGTGGAA GGCCGCGTAT
TCGTTGTGGG GGAAATTGCT GCCGGCCAGA CGAGCAGCAA ATGACTCGCC CGATACGCCG
ATCGACACTA CGCTACGCTT CCCGGGCCAA TGGGCAGACG ATGAGAGCGG GCTCAGCTAC
AACCTGAATC GCTACTATGA CCCAGATTCG GGCCAGTATC TCAGTCCGGA CCCGATCGGA
CTGCAAGGCG GTTTGCGCAC TCAAGGATAC GTACACATAC CGGACGCGTG GGCTGATCCT
CTCGGATTGA ACCCGTGCGA GAAGGACTGG AAGGAATATT ATTCCAAGAA GACTGGGACC
AGTCCTCCGT CCACGATGGA GAACCCCCAT GCTCACCATA TCATTTTTAA GGGCGACTTT
TCCCGGTCGC CAGCTATGCA GAGAGAACTG GGACGAAGTC GTGCGATAGC TGAAAAGTAC
GGTATCGACC CGGTGTACGA TACAGATACG ATGATGTGGG CTGAGAACCA GGGGCATTCG
ATTCCAAACG CTCGGGCTGT TGCGGACGGA ATGACAGCCG CTGACGCAAA AATTAGCGAG
ATGGGACTGG GAAAAACGGA AGCGACATCG ATGATGAAGG CTGAGATCCA GCGCATCGGG
CAAGAAATAT TCGGATCGAA GTGA
 
Protein sequence
MSDTPNYNEP SGSAQERLDQ IAGLEDGEAA KAAEQPFYEH LNYGMLGADA GLTAVEGTAA 
GLGAAGTALA GGATGGAALG AGAIAAGTVM LPLAIAVGGA WALDKVGVTG WLSKEFTQVG
DALGLTIGRG DPHPACIGDR IAHSSGFMGI LAGIAVGVAI GVAVAATVAT GGLAGALIVG
ACMAGGLTLG SALASASQSM GSNCGEIVTG SSNVYFEGKK VARVTDLVKC DHHSGVPQAL
VDGSKTVFVN GLPLVRIGHE THCSGKVNSG RNSIWIDKTT GHYGPKNPEL SATQEFLAGL
LGGIVGGGVG KFAGKGLRGL REKFKPEPTR SAEQKGIKDE NRPTCKDPVD PVSGEMLEIR
TDLVIPGILP LEFKRRYRTR SDDRGLLGHR WSDNWSQQLT FDGGRFVRFH DGAGLVIGFD
APDMALNGIN LREPRYRLVG SRLEPRIFDR DTRQLRIFAP LVDGRSSRLE RIEDLDGNAI
VLSYDIAGRL SGMAHSDGYR LEIVCHGRDR RLERIVLHDA DGRSRTLVDY DYQNSMLTHV
ASFQFGQFYY AYDEHGWMTQ WRDTDQTDVR YRYDTAGRVV ETGTQQGYHT GRFIYEAGRT
RVIDVDGEWT YDYDDEGLVT AETDPLGHCT RSEWELGRLM ARIDPLGRRT DYRYDDRGQL
ISVTDSSGRT IGFEYDDAQL LIATSLPNGG RTKFEYDHLR RLIARTESDG TKTTYRYGPH
GELLRIVAGE SETRLDYDDR LRLTDIALPT GARFRRKVDL LGRILEETSP DGHVSRFDYT
DGPDNPRGHL RAITRPDGTI LEARYNSEGL PVEWIDPLGR TTQRTYGPFD LLTASTDAAG
HVTRFEYDHA TRLTKVVNAL GEAYTYRYDA AGRLAAEIDW GGRTTQYELD AAGRLLAKTL
PDGGQWHYTY DGFDRLVEVN AGDVTLAYRY DARGRLESAE VLGEHAHVTR FAYDRYGRLI
GEDQHGELLR HVYDADGQRR LRITPRRETP YAYDALGTLT QVGGLTVQRD GLGRQIGRQA
GTFVTQQQYD ELGRIRRLIA GPAAAFDALQ DEPARALEQL TRQIYHYDAA GQLECIDADV
DTLTYRRDVR GQIVSAESLL QPAEHFGYDA AMNIAAHGRQ APVDAHHYYR GGLPERVGYA
RYRYDARGRT IEKTIEQPGF RPKAWQYTWD GLNRLVKVVT PERGVWLYRY DAFNRRVEKQ
QLGSREAVKF LWDGSTLAER WIEQRDGTTG QVVTWHIEPG SFSPLAQETE DGLYAILTDQ
IGLPKAMFDE HGKPVWKAAY SLWGKLLPAR RAANDSPDTP IDTTLRFPGQ WADDESGLSY
NLNRYYDPDS GQYLSPDPIG LQGGLRTQGY VHIPDAWADP LGLNPCEKDW KEYYSKKTGT
SPPSTMENPH AHHIIFKGDF SRSPAMQREL GRSRAIAEKY GIDPVYDTDT MMWAENQGHS
IPNARAVADG MTAADAKISE MGLGKTEATS MMKAEIQRIG QEIFGSK