Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_5261 |
Symbol | |
ID | 6128072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | + |
Start bp | 2362974 |
End bp | 2367437 |
Gene Length | 4464 bp |
Protein Length | 1487 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641652352 |
Product | YD repeat-containing protein |
Protein accession | YP_001778880 |
Protein GI | 170737620 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG3209] Rhs family protein [COG4104] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.792751 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGACA CGCCGAACTA CAACGAGCCG AGCGGCAGCG CCCAGGAGCG TCTCGATCAG ATCGCCGGGC TGGAGGACGG TGAAGCCGCG AAAGCGGCCG AGCAGCCGTT TTACGAGCAC CTCAACTACG GGATGCTCGG CGCCGATGCG GGCCTGACCG CCGTCGAGGG GACGGCCGCC GGGCTGGGTG CCGCCGGTAC GGCGCTCGCG GGTGGGGCGA CCGGCGGGGC GGCACTGGGC GCGGGCGCGA TTGCGGCGGG CACCGTCATG CTTCCGCTGG CGATTGCGGT CGGCGGTGCG TGGGCGCTCG ACAAGGTTGG CGTGACCGGC TGGCTATCGA AGGAATTCAC GCAGGTTGGC GACGCGCTCG GCCTCACGAT CGGCCGCGGC GATCCGCATC CCGCCTGCAT TGGCGATCGG ATCGCGCACT CGTCGGGTTT TATGGGGATT CTCGCCGGCA TTGCCGTGGG GGTCGCGATT GGCGTGGCAG TGGCGGCGAC CGTGGCAACC GGTGGACTCG CCGGTGCGCT GATCGTCGGC GCGTGCATGG CGGGCGGCCT GACGCTGGGG AGTGCGCTCG CGTCGGCGAG CCAGAGCATG GGCAGCAACT GTGGCGAGAT CGTCACCGGT TCGAGCAACG TGTACTTCGA AGGCAAGAAG GTGGCGCGTG TCACGGACCT GGTGAAATGC GATCACCATT CCGGCGTGCC GCAGGCACTC GTCGACGGCA GCAAGACCGT GTTCGTCAAC GGCCTGCCGC TGGTGCGGAT CGGCCACGAA ACGCACTGTA GCGGCAAGGT CAATTCGGGG CGCAACAGCA TCTGGATCGA CAAGACGACT GGACACTACG GTCCGAAGAA CCCGGAGTTG TCCGCGACTC AGGAATTCCT GGCGGGTTTG CTCGGCGGGA TCGTAGGAGG CGGAGTCGGA AAATTTGCCG GCAAGGGGCT GCGGGGGTTG CGCGAAAAAT TCAAGCCCGA GCCCACCCGA TCCGCGGAAC AGAAGGGCAT CAAGGACGAG AACCGGCCGA CGTGCAAGGA CCCGGTTGAT CCTGTGTCCG GAGAAATGCT CGAGATCCGT ACGGATCTCG TCATTCCCGG CATCCTGCCT CTCGAGTTCA AGCGACGCTA TCGGACTCGA TCGGACGACC GCGGATTGCT CGGTCACCGC TGGTCGGACA ACTGGTCGCA GCAACTGACG TTCGATGGCG GCCGCTTCGT GAGATTCCAC GACGGCGCCG GCCTGGTGAT CGGCTTTGAC GCGCCGGATA TGGCGCTCAA CGGCATCAAC TTGCGCGAGC CGCGTTATCG GCTGGTCGGA AGCCGGCTCG AACCGCGCAT CTTCGATCGC GATACGCGGC AACTGCGTAT TTTCGCGCCG CTCGTCGATG GGCGTTCGTC TCGCCTCGAA CGGATCGAGG ACCTCGACGG TAACGCAATC GTTCTCTCGT ACGATATTGC CGGACGTTTG AGTGGTATGG CCCATAGCGA CGGCTATCGG CTCGAGATTG TTTGTCACGG GCGCGACCGA CGGCTGGAAC GGATCGTTCT TCACGATGCG GACGGCAGGT CCCGGACACT CGTGGACTAC GACTACCAGA ACAGCATGCT TACCCACGTG GCGAGCTTCC AGTTTGGCCA GTTCTACTAC GCGTATGACG AACACGGCTG GATGACCCAG TGGCGGGATA CGGACCAGAC GGACGTTCGA TATCGGTACG ACACCGCTGG TCGTGTCGTC GAGACCGGCA CGCAGCAGGG TTATCACACA GGTCGGTTCA TCTACGAGGC CGGTCGCACA CGGGTGATCG ATGTCGACGG AGAATGGACC TACGACTATG ACGATGAGGG TCTTGTAACG GCCGAAACCG ATCCGCTCGG CCATTGCACT CGCTCCGAAT GGGAGCTTGG TCGCTTGATG GCTCGGATCG ATCCGCTGGG TCGACGGACG GACTATCGCT ATGACGATCG AGGCCAACTG ATTTCGGTTA CAGACAGTTC GGGGCGCACG ATTGGCTTTG AATATGATGA CGCGCAGTTG CTCATTGCGA CGAGTTTGCC GAACGGCGGC CGGACCAAGT TCGAGTACGA TCACCTACGC CGGTTGATTG CGCGTACCGA GTCGGATGGT ACTAAGACGA CCTACCGCTA CGGCCCGCAC GGCGAATTGC TGCGTATCGT TGCCGGCGAG AGCGAAACCC GCCTCGACTA CGACGACCGG TTGCGACTCA CCGATATCGC ACTGCCGACG GGTGCGCGCT TCCGGCGCAA GGTCGACCTG CTGGGGCGGA TACTGGAGGA AACATCGCCC GACGGGCATG TGAGCCGCTT TGACTATACC GACGGTCCGG ACAATCCGCG TGGCCATCTA AGAGCGATCA CGCGCCCCGA TGGCACGATC TTGGAAGCGC GATACAACAG CGAGGGCTTA CCGGTCGAGT GGATTGATCC GCTCGGGCGC ACAACACAGC GAACCTATGG CCCCTTCGAC CTGCTGACGG CATCGACCGA TGCCGCTGGT CATGTCACGC GTTTCGAGTA CGACCACGCG ACGCGATTGA CAAAGGTCGT CAACGCACTG GGCGAAGCTT ACACCTACCG CTACGATGCG GCTGGGCGGC TCGCGGCTGA AATCGATTGG GGCGGCCGCA CGACCCAATA CGAGCTGGAC GCTGCCGGCC GCCTCCTCGC GAAAACGCTG CCTGACGGCG GGCAGTGGCA TTACACGTAC GATGGTTTCG ATAGGCTCGT CGAGGTCAAT GCAGGAGACG TCACGCTTGC GTACCGCTAC GACGCACGTG GACGACTGGA ATCGGCGGAG GTGCTAGGTG AGCACGCTCA CGTGACCCGC TTTGCTTACG ACCGATACGG ACGATTGATT GGCGAGGACC AGCACGGCGA ACTGCTGCGA CACGTCTACG ACGCTGACGG GCAGCGGCGT CTGCGGATTA CGCCGCGGCG GGAGACGCCC TACGCGTACG ATGCGCTCGG CACGCTGACG CAGGTTGGAG GGCTGACGGT CCAGCGCGAC GGCCTAGGAC GCCAGATTGG TCGGCAAGCA GGGACGTTTG TTACGCAGCA GCAGTACGAC GAGCTTGGTC GGATCCGCCG CCTGATCGCG GGACCCGCCG CTGCGTTCGA TGCCTTGCAA GACGAACCGG CCCGTGCGCT CGAGCAATTG ACACGCCAGA TCTATCACTA CGACGCCGCC GGACAGCTGG AGTGCATTGA CGCCGACGTC GATACGCTCA CGTATCGGCG CGACGTGCGC GGCCAAATCG TCTCAGCGGA AAGTTTGCTA CAGCCGGCGG AGCACTTCGG TTACGACGCA GCGATGAACA TCGCCGCGCA CGGGCGGCAA GCCCCGGTAG ATGCTCACCA TTACTACCGG GGTGGCCTGC CGGAACGGGT CGGCTACGCG CGCTATCGAT ACGATGCACG AGGTCGCACG ATCGAAAAGA CGATTGAACA GCCCGGGTTT CGGCCAAAGG CGTGGCAGTA CACGTGGGAT GGGCTCAACC GGCTCGTGAA GGTCGTGACG CCCGAACGCG GCGTTTGGCT GTATCGCTAC GACGCCTTCA ACCGCAGGGT CGAGAAGCAA CAACTCGGTA GTCGCGAGGC GGTGAAGTTT CTGTGGGACG GCTCGACGCT GGCGGAGCGC TGGATCGAGC AGCGGGACGG TACGACTGGT CAGGTTGTAA CGTGGCATAT CGAGCCGGGC AGTTTCTCGC CGCTCGCGCA GGAGACCGAG GACGGTCTAT ACGCGATCCT GACTGACCAG ATTGGCCTAC CGAAGGCGAT GTTCGATGAA CACGGCAAGC CTGTGTGGAA GGCCGCGTAT TCGTTGTGGG GGAAATTGCT GCCGGCCAGA CGAGCAGCAA ATGACTCGCC CGATACGCCG ATCGACACTA CGCTACGCTT CCCGGGCCAA TGGGCAGACG ATGAGAGCGG GCTCAGCTAC AACCTGAATC GCTACTATGA CCCAGATTCG GGCCAGTATC TCAGTCCGGA CCCGATCGGA CTGCAAGGCG GTTTGCGCAC TCAAGGATAC GTACACATAC CGGACGCGTG GGCTGATCCT CTCGGATTGA ACCCGTGCGA GAAGGACTGG AAGGAATATT ATTCCAAGAA GACTGGGACC AGTCCTCCGT CCACGATGGA GAACCCCCAT GCTCACCATA TCATTTTTAA GGGCGACTTT TCCCGGTCGC CAGCTATGCA GAGAGAACTG GGACGAAGTC GTGCGATAGC TGAAAAGTAC GGTATCGACC CGGTGTACGA TACAGATACG ATGATGTGGG CTGAGAACCA GGGGCATTCG ATTCCAAACG CTCGGGCTGT TGCGGACGGA ATGACAGCCG CTGACGCAAA AATTAGCGAG ATGGGACTGG GAAAAACGGA AGCGACATCG ATGATGAAGG CTGAGATCCA GCGCATCGGG CAAGAAATAT TCGGATCGAA GTGA
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Protein sequence | MSDTPNYNEP SGSAQERLDQ IAGLEDGEAA KAAEQPFYEH LNYGMLGADA GLTAVEGTAA GLGAAGTALA GGATGGAALG AGAIAAGTVM LPLAIAVGGA WALDKVGVTG WLSKEFTQVG DALGLTIGRG DPHPACIGDR IAHSSGFMGI LAGIAVGVAI GVAVAATVAT GGLAGALIVG ACMAGGLTLG SALASASQSM GSNCGEIVTG SSNVYFEGKK VARVTDLVKC DHHSGVPQAL VDGSKTVFVN GLPLVRIGHE THCSGKVNSG RNSIWIDKTT GHYGPKNPEL SATQEFLAGL LGGIVGGGVG KFAGKGLRGL REKFKPEPTR SAEQKGIKDE NRPTCKDPVD PVSGEMLEIR TDLVIPGILP LEFKRRYRTR SDDRGLLGHR WSDNWSQQLT FDGGRFVRFH DGAGLVIGFD APDMALNGIN LREPRYRLVG SRLEPRIFDR DTRQLRIFAP LVDGRSSRLE RIEDLDGNAI VLSYDIAGRL SGMAHSDGYR LEIVCHGRDR RLERIVLHDA DGRSRTLVDY DYQNSMLTHV ASFQFGQFYY AYDEHGWMTQ WRDTDQTDVR YRYDTAGRVV ETGTQQGYHT GRFIYEAGRT RVIDVDGEWT YDYDDEGLVT AETDPLGHCT RSEWELGRLM ARIDPLGRRT DYRYDDRGQL ISVTDSSGRT IGFEYDDAQL LIATSLPNGG RTKFEYDHLR RLIARTESDG TKTTYRYGPH GELLRIVAGE SETRLDYDDR LRLTDIALPT GARFRRKVDL LGRILEETSP DGHVSRFDYT DGPDNPRGHL RAITRPDGTI LEARYNSEGL PVEWIDPLGR TTQRTYGPFD LLTASTDAAG HVTRFEYDHA TRLTKVVNAL GEAYTYRYDA AGRLAAEIDW GGRTTQYELD AAGRLLAKTL PDGGQWHYTY DGFDRLVEVN AGDVTLAYRY DARGRLESAE VLGEHAHVTR FAYDRYGRLI GEDQHGELLR HVYDADGQRR LRITPRRETP YAYDALGTLT QVGGLTVQRD GLGRQIGRQA GTFVTQQQYD ELGRIRRLIA GPAAAFDALQ DEPARALEQL TRQIYHYDAA GQLECIDADV DTLTYRRDVR GQIVSAESLL QPAEHFGYDA AMNIAAHGRQ APVDAHHYYR GGLPERVGYA RYRYDARGRT IEKTIEQPGF RPKAWQYTWD GLNRLVKVVT PERGVWLYRY DAFNRRVEKQ QLGSREAVKF LWDGSTLAER WIEQRDGTTG QVVTWHIEPG SFSPLAQETE DGLYAILTDQ IGLPKAMFDE HGKPVWKAAY SLWGKLLPAR RAANDSPDTP IDTTLRFPGQ WADDESGLSY NLNRYYDPDS GQYLSPDPIG LQGGLRTQGY VHIPDAWADP LGLNPCEKDW KEYYSKKTGT SPPSTMENPH AHHIIFKGDF SRSPAMQREL GRSRAIAEKY GIDPVYDTDT MMWAENQGHS IPNARAVADG MTAADAKISE MGLGKTEATS MMKAEIQRIG QEIFGSK
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