| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5009 |
|---|
| Symbol | |
|---|
| ID | 6127821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 2064064 |
|---|
| End bp | 2065176 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641652101 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001778629 |
|---|
| Protein GI | 170737369 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTC TCTACAAGCT CGCCCCGCTC GCGATGCTCG GCGCCTTCGC GACCCATGCC
GGGGCGCAAA GCAGCATCAC GCTGTACGGT CTCATCTCGG CCGGTGTCGG GTTCGCGACG
AACCAGGGCG GCAAGAACGC GTGGCAGGCG CTGTCCGGCA CGAACCAGAA CCCGCGCTGG
GGGTTGAAGG GCAAGGAAGA TCTCGGGCAG GGGCTGTCCG CGGTGTTCCA GCTCGAGAAC
GGCTTCAACG TGATGACGGG CACGGCCGCG CAGAACGGCC GCGAGTTCGG GCGCATGGCG
TATGTCGGCC TGGCCGACCG CACCTACGGC GCGCTGACGT TCGGCCGCCA GTACGACGCG
ATCCACGACT ACATCGGGCC GGTGATCATC GCGAGCAACG GCGTGAACAT CGGCGACAAC
GACAACGGCT ACAACGACAT CCGCGTGCAG AACTCGGTGA AGTACGTGAG CCCCGTCCAC
TACGGGCTGA AGTTCACCGC GCTGTACGGC TTCAGCAATA CGACCGGTTT CGCGAACAAC
AGCGCGTACA GCTTCGGGCT CGGCTATGAG CGTGGCCCGC TGCGCTGGAG CGTGGTCTAT
GCGCAGTACA ACCATCCGTA CAGCGCGACG AACCAGGACG GCGCGATCGC GAACGACTAT
GCGTCGCCGC TGCTGATCTT CAGCAAGAGC GCGATGTCGC CGGCGGCGTA CGCGAGCCGG
CAGCGGATCG CGGGCACGGG CGGCTTCTAC ACGATCGGCC GCGCGCAGTT CGCGGCGATG
TTCACCGACG TACGCTACGA TTACCTCGAC AATTCGCATC TGCACCTGCA GAACCTGGGC
GTGAACGTCG TCTACACGAT GACGCCGCAG CTCTTTCTCG GCGCCGCGTA CGCGTTCACG
AACGGCAAGT ACGACGTGAT CGACAAGCGT CCGAAATGGC ATCAGGTGAA CCTGCAGGCC
GACTACTTCC TGTCCAAACG CACCGACGTC GCGCTGACGG TGATCGCGCA GCAGGCGGCC
GGCGACGCGG ATCATGCGCA GATCTTCGCG TATGCACGTT CGACCGGCAC GCGCCAGATG
ATGGCGACGC TCGGCGTGCG GCACGTGTTC TGA
|
|---|
| Protein sequence | MKTLYKLAPL AMLGAFATHA GAQSSITLYG LISAGVGFAT NQGGKNAWQA LSGTNQNPRW
GLKGKEDLGQ GLSAVFQLEN GFNVMTGTAA QNGREFGRMA YVGLADRTYG ALTFGRQYDA
IHDYIGPVII ASNGVNIGDN DNGYNDIRVQ NSVKYVSPVH YGLKFTALYG FSNTTGFANN
SAYSFGLGYE RGPLRWSVVY AQYNHPYSAT NQDGAIANDY ASPLLIFSKS AMSPAAYASR
QRIAGTGGFY TIGRAQFAAM FTDVRYDYLD NSHLHLQNLG VNVVYTMTPQ LFLGAAYAFT
NGKYDVIDKR PKWHQVNLQA DYFLSKRTDV ALTVIAQQAA GDADHAQIFA YARSTGTRQM
MATLGVRHVF
|
|---|
| |