| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5004 |
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| Symbol | |
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| ID | 6127816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010515 |
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| Strand | + |
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| Start bp | 2055046 |
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| End bp | 2056389 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641652096 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001778624 |
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| Protein GI | 170737364 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.278791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.604975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGC GACAGCAGGC TGAGGCCTGG CATGAACTGG TGAGGCGTTA CCGCGATGTC
TGGCGTCACT GCTGGAAGCG GCGCCATTGG ATGACGCTGC CGGCATTCGA CGCGAACGAG
GCCGAATTTC TGCCGGCGGC GCTGTCTGTC CAGGCGGCAC CTGTTTCGCC GGCAGGCCGG
TGGGTCGCGC GCATTCTCAC CCTGCTCGTG ACGACTGCGA TTCTCTGGTC GTACTTCGGG
AAAATCGACA TTGTTGTCGA CGGCGGCGGA AAGATCATTC CATCCGTCCG GACCAAGACA
CTGGCGGCGG TCGAAGTGGC GAGCGTCAGA GCGCTGCACG TGCGCGACGG GCAGATCGTA
AAGACTGGCG ATGCGCTGAT CGATCTCGAC ACACGCGTGA TCGACGCTGA ACGTCAACGG
GCGAACGGCG ACCGGCTGAA CGCGGTACTG CAAGTCGAGC GTGCACGGGC GCTGATCGAC
GCGATCGACA CGGGGCGCCC ACCTCGACTG GCGGATGTGG AGGGCGTGTC GCCCGAGCGG
CGGCGTGAGG TCGAACGGCA CCTGCTGGAT CAATGGCGCG ATTTCGTCGC GCGGCGGGAC
CGTCTCGACA GCGAAGTACA CAGGTATGGT CAGGCCGCTC CGCTTGCGGC GCGTCGTGCC
GACGATTACG CCAGGTTGAT GAGGACCGGT GACGTTGCGG AGCACGCGTG GATCGAGGCC
GAGCAGCAGC GCATCGATAT GGCGGGACAG CTCGCGGATG CTCGTCACCA ACGCGCGGCG
CTCGTGGCAG AGACGCGAAG GAATATCCAG GATGCGCTGA ACGATGCGCA GCGTATCGTC
GATGCATCGT CGGGTGACAT GCGGCGTGCG GAGGCTCACG GGGAACTGCT GCGCCTGACT
GCACCGATCG ACGGAACCGT CCAGCAGCTT GCCGTCCATA CCATCGGGAC GGCGGTACCG
GCCGCGCAGC CGCTGATGCA GATCGTGCCG CGAGAGGGGG CCGTAGAGAT GGAAGCATTC
GTCGACAACC GGGATATCGG CTTCGTCAAG GAGGGACAGG TTGCCAGCGT GAAGATCGAC
GCATTCGAGT ACACGAAATA CGGCACGGTG TCGGCAATCG TGAGTCATGT TTCGCGCGAT
GCGATAGACG ACGACAAGAA GGGGCTCGTC TACTCGGTCA GGATCATGCT TGATCGTTCG
GCGTTGGTGG TGGACGGTCG TGAGATCGCG CTGTCGCCGG GTATGTCGGG TAGCGCTGAG
ATCAGAACCG GTACGCGGCG GGTAATCGAG TATGTGCTGT CGCCGTTGCT GCAGCATGCA
CGGGAGAGTT TGCGTGAGCG CTAG
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| Protein sequence | MSVRQQAEAW HELVRRYRDV WRHCWKRRHW MTLPAFDANE AEFLPAALSV QAAPVSPAGR
WVARILTLLV TTAILWSYFG KIDIVVDGGG KIIPSVRTKT LAAVEVASVR ALHVRDGQIV
KTGDALIDLD TRVIDAERQR ANGDRLNAVL QVERARALID AIDTGRPPRL ADVEGVSPER
RREVERHLLD QWRDFVARRD RLDSEVHRYG QAAPLAARRA DDYARLMRTG DVAEHAWIEA
EQQRIDMAGQ LADARHQRAA LVAETRRNIQ DALNDAQRIV DASSGDMRRA EAHGELLRLT
APIDGTVQQL AVHTIGTAVP AAQPLMQIVP REGAVEMEAF VDNRDIGFVK EGQVASVKID
AFEYTKYGTV SAIVSHVSRD AIDDDKKGLV YSVRIMLDRS ALVVDGREIA LSPGMSGSAE
IRTGTRRVIE YVLSPLLQHA RESLRER
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