Gene Bcenmc03_4960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_4960 
Symbol 
ID6127772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010515 
Strand
Start bp1993215 
End bp1994393 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content66% 
IMG OID641652047 
Productextracellular ligand-binding receptor 
Protein accessionYP_001778580 
Protein GI170737320 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.00971777 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCGGCGG CGGCCCAACC ACGCCATCAA GGGGAAGTGA AAGTGAAGCT GAAGGTATCG 
CACGTCGCGC TGGCCGCCGC CTGCGCACTG TCGGGCGCGC ACGCCGTCGC CGCCGACGTC
GTCAAGATCG GTTTCGCCGC ACCGCTGACC GGCCCGCAGT CGAATTACGG CACGGACATG
CAGAAGGGCG TGCAGCTCGC GATCGCCGAT TTCAACGCGA CGCATCCGAC GATCGGCGGC
AAGCCCGTCA CGTTCCAGCT CGACTCGCAG GACGACCAGG CCGACCCGCG CACCGGCACG
ACCGTCGCAC AGCGGCTGAT CGACGACAAC GTCCGCGGCG TCATCGGCCA CTTCAACTCG
GGCACCAGCA TTCCGGCGTC CGACCTGTAC GATCGCGCGG GGCTGCCGCA GATCTCGATG
GCGACGTCGC CGCAATACAC GGCGCGCGGC TACAAGACGA CCTACCGGCT GCTGACGAGC
GACGCGCAGG CCGGCCGCAT CGTCGGCACG TACGCGGTCA AGACGCTGCG CTTCAAGCGC
ATCGCGATCA TCGACGACCG CACTGCCTAC GGCCAGGGCA TCGCCGACGA ATTCGCGAAG
GCCGTGGAAG CGGCCGGCGG CACGATCGTC AAGCGCGACT TCACGAACGA CAAGGCGCTC
GATTTCTCCG CGATCCTGAC CAACCTGAAG GGCGTGAATC CGGACGCGGT CTTCTACGGC
GGTGGCGACG CGCAATCGTC GCCGATGATC CGCAAGATGC GCCAGCTCGG GATGAAGTCG
GCGTTCGTGA CGGGCGAAAT GTCGCGCTCG CCGACGTTCC TGAAGGTCGG CGGCGACGCG
GCCGAAGGCG CGATCGTCTA CATGGGCGGG CTGCCGAAGG AAAAGATGCC GGGCTTCTCC
GGCTACGCGG CACGCTACAA GGCGCGCTTC AACGAAGACG TGATCACGTA CTCGCCGTAT
TCGTACGACG GCACGATCGC GCTGCTCACC GCGATGAAGG ACGCGAACTC GACCGACCCG
AAGGTGTACA CGCCGTATCT CGGCAAGGTG TCGATCAAGG GCGTGTCGGC GCCCAGCATC
GCGTACGACC CGAAGGGCGA CCTGAAGGAC GCACCGGTCA CGATCTACAA GGTCGAGCGC
GGCGCCTTCA AGCCGGTCGA TACGATCGCC GGCAACTGA
 
Protein sequence
MPAAAQPRHQ GEVKVKLKVS HVALAAACAL SGAHAVAADV VKIGFAAPLT GPQSNYGTDM 
QKGVQLAIAD FNATHPTIGG KPVTFQLDSQ DDQADPRTGT TVAQRLIDDN VRGVIGHFNS
GTSIPASDLY DRAGLPQISM ATSPQYTARG YKTTYRLLTS DAQAGRIVGT YAVKTLRFKR
IAIIDDRTAY GQGIADEFAK AVEAAGGTIV KRDFTNDKAL DFSAILTNLK GVNPDAVFYG
GGDAQSSPMI RKMRQLGMKS AFVTGEMSRS PTFLKVGGDA AEGAIVYMGG LPKEKMPGFS
GYAARYKARF NEDVITYSPY SYDGTIALLT AMKDANSTDP KVYTPYLGKV SIKGVSAPSI
AYDPKGDLKD APVTIYKVER GAFKPVDTIA GN