Gene Bcenmc03_4556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_4556 
Symbol 
ID6127378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010515 
Strand
Start bp1542008 
End bp1543981 
Gene Length1974 bp 
Protein Length657 aa 
Translation table11 
GC content67% 
IMG OID641651653 
Productsqualene-hopene cyclase 
Protein accessionYP_001778186 
Protein GI170736926 
COG category[I] Lipid transport and metabolism 
COG ID[COG1657] Squalene cyclase 
TIGRFAM ID[TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.282201 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.128502 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGATC TCACCGAAAT GGCTACCTTG TCCGCCGGCG CCGTGCCGGC AGGCGTCGAC 
ACGGCGGTCG CGCGTGCGAC CGACGCGCTG CTCGCCGCGC AGCAAGCGGA TGGCCACTGG
GTCTACGAAC TCGAGGCGGA TTCGACGATT CCCGCCGAAT ACGTGCTGCT CGTCCACTAT
CTGGGCGAGA CGCCGAACCT CGAGCTCGAA CAGAAGATCG GCAAGTATCT GCGCCGCATC
CAGCAGGCCG ACGGCGGCTG GCCGCTGTTC ACCGACGGCG CGCCGAACAT CAGCGCGAGC
GTGAAGGCGT ATTTCGCGCT GAAGGTGATC GGCGATGATG AAAACGCCGA GCACATGCAG
CGCGCGCGCC GTGCCATCCA TGCGATGGGC GGCGCCGAGA TGTCGAACGT GTTCACGCGC
ATCCAGCTCG CGCTGTACGG GGCGATTCCG TGGCGCGCGG TGCCGATGAT GCCGGTCGAG
ATCATGCTGC TGCCGCAGTG GTTCCCGTTC CACCTGTCGA AGGTGTCGTA CTGGGCGCGC
ACCGTGATCG TGCCGCTGCT CGTGCTGAAC GCGAAGCGTC CGCTCGCGAA GAACCCGCGC
GGCGTGCGCA TCGACGAGCT GTTCATCGAT CCGCCCGTCA ACGCCGGGCT GCTGCCGCGC
CAGGGCCATC AGAGCGCCGG CTGGTTCGCG TTTTTCCGCG TGGTCGACCA TGCGCTGCGC
GCGGTCGACG GCCTGTTCCC GAGCTATACG CGCGAACGCG CGATCCGTCA GGCTGTGTCG
TTCGTCGACG AGCGCCTGAA CGGCGAGGAC GGCCTCGGCG CGATCTATCC GGCGATGGCC
AACGCGGTGA TGATGTACGA CGTGCTCGGC TACGCCGAAG ATCATCCGAA CCGTGCGATC
GCGCGCAAGG CGCTCGAGAA GCTGCTCGTC GTGCACGACG ACGAGGCGTA TTGCCAGCCG
TGCCTGTCGC CCGTATGGGA TACGTCGCTC GTCGCGCATG CGCTGCTCGA AACTGGCGAT
GCGCGTGCCG AGGAAGCCGT GCTCCGCGGC CTCGAATGGC TGCGCCCGCT GCAGATTCTC
GACGTGCGCG GCGACTGGAT CTCGCGCCGC CCGAACGTGC GGCCCGGCGG CTGGGCGTTC
CAGTACGCGA ACGCGCACTA CCCTGACGTC GACGATACGG CCGTGGTCGT GATGGCGATG
GATCGCGCGC AAAAGCTCAA ACAGTCGGAC ACGTATCGCG AATCGATGGC GCGGGCGCGC
GAATGGGTCG TCGGCATGCA GAGCAGCGAC GGCGGCTGGG GCGCGTTCGA ACCGGAAAAC
ACGCAGTACT ACCTGAACAA CATCCCGTTC TCCGATCACG GCGCGCTGCT CGATCCGCCG
ACGGCCGACG TGTCGGGCCG CTGCCTGTCG ATGCTGTCGC AGCTCGGCGA GACGCCGCTG
AACAGCGAGC CGGCCCGTCG CGCGCTCGAC TACATGCTGA AGGAACAGGA GCCGGACGGC
AGCTGGTACG GTCGCTGGGG GATGAACTAC GTGTACGGCA CGTGGACGGC GCTGTGCTCG
CTGAACGCGG CCGGTCTGAC GCCGGACGAC CCGCGCATGA AGCGCGCTGC GCAGTGGCTG
CTGTCGATCC AGAACAAGGA CGGCGGCTGG GGCGAGGACG GCGACAGCTA CAAGCTGAAC
TACCGGGGTT ACGAGCAGGC GCCGAGCACG GCGTCGCAGA CGGCCTGGGC GTTGCTCGGC
CTGATGGCGG CCGGCGAGGT GAACAACCCG GCCGTGGCAC GCGGCGTCGA CTACCTGGTC
GCTCAGCAGA ACGAAGAAGG CTTGTGGGAC GAGACGCGCT TCACGGCAAC GGGCTTCCCG
CGCGTGTTCT ACCTGCGCTA CCACGGCTAT CGGAAGTTCT TCCCGCTGTG GGCGCTCGCG
CGCTACCGCA ACCTGAAGCG CGCGAACGCC ACGCGCGTGA CGGTCGGGAT GTAA
 
Protein sequence
MNDLTEMATL SAGAVPAGVD TAVARATDAL LAAQQADGHW VYELEADSTI PAEYVLLVHY 
LGETPNLELE QKIGKYLRRI QQADGGWPLF TDGAPNISAS VKAYFALKVI GDDENAEHMQ
RARRAIHAMG GAEMSNVFTR IQLALYGAIP WRAVPMMPVE IMLLPQWFPF HLSKVSYWAR
TVIVPLLVLN AKRPLAKNPR GVRIDELFID PPVNAGLLPR QGHQSAGWFA FFRVVDHALR
AVDGLFPSYT RERAIRQAVS FVDERLNGED GLGAIYPAMA NAVMMYDVLG YAEDHPNRAI
ARKALEKLLV VHDDEAYCQP CLSPVWDTSL VAHALLETGD ARAEEAVLRG LEWLRPLQIL
DVRGDWISRR PNVRPGGWAF QYANAHYPDV DDTAVVVMAM DRAQKLKQSD TYRESMARAR
EWVVGMQSSD GGWGAFEPEN TQYYLNNIPF SDHGALLDPP TADVSGRCLS MLSQLGETPL
NSEPARRALD YMLKEQEPDG SWYGRWGMNY VYGTWTALCS LNAAGLTPDD PRMKRAAQWL
LSIQNKDGGW GEDGDSYKLN YRGYEQAPST ASQTAWALLG LMAAGEVNNP AVARGVDYLV
AQQNEEGLWD ETRFTATGFP RVFYLRYHGY RKFFPLWALA RYRNLKRANA TRVTVGM