Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_4554 |
Symbol | |
ID | 6127376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | + |
Start bp | 1539880 |
End bp | 1540728 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641651651 |
Product | squalene synthase HpnD |
Protein accession | YP_001778184 |
Protein GI | 170736924 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.124742 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.209496 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCCGTTT CCCATTCCGT CGTGGACGAA CAAGAAACCG ACGCCGCTGC CGTCACATCG GGCAGTTCTT TCTATCTGGC GATGCGCATC CTGCCGGCCG TGCAGCGCGA TGCGATGTTC CAGGTCTACG CGTTTTGCCG CGCGGTCGAC GACATCGCCG ACAGCGATCT GCCGCGCGCG GAGCGCAACG CGGGCTTGAA TCGCTGGCGC GCGGACATCG ACGCCTGCTT CGCCGGTCGG CCGCCGCGCC ACCTGGTCGC GCTCGATCGC GAGATTCGCG CGTTCAACCT GCAGCGCGAC GATTTCCACG CGATGATCGA CGGAATGGCG ATGGACGCGG CCGAAGATAT CTGCGCGCCC GACGAGCCGA CGCTCGACCT TTTCTGCGAT CGCGTGGCGA GCGCGGCCGG CCGGCTGTCG GTGAGGATCT TCGGGATGCC GGAAGCCGAA GGGATCACGC TGTCGCACCA CCTGGGCCGC GCGCTGCAAC TGACGAACAT CCTGCGCGAC ATCGACGACG ACGCGGCAAT CAACCGGTGC TACCTGCCGC GCGAGCTGCT CGCGCGCGAA GGCATCGCGA TCACCGATCC GGCGACGATC GTGCGCGATC CGGCGCTGCC GCGCGTGTGC GCGACGCTCG TCGAGCGCGC GCTCGAGCAC TTCCGCCAGG CCGACGCGGT GATGGACACC TGCCCGCGTG CGCAGGTGAA GGCGCCGCGC ATCATGTCGG GCGCGTATCG CTGCATTCTC GAGGCCGCGA TCGCACGCGG CTTTGCCGCA CCGCGCGCGC CGCTGCGCAA GCCGAAGGCG CGCATGCTGA TGATCGCCGC GCGTTACGCG CTGTTCTGA
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Protein sequence | MAVSHSVVDE QETDAAAVTS GSSFYLAMRI LPAVQRDAMF QVYAFCRAVD DIADSDLPRA ERNAGLNRWR ADIDACFAGR PPRHLVALDR EIRAFNLQRD DFHAMIDGMA MDAAEDICAP DEPTLDLFCD RVASAAGRLS VRIFGMPEAE GITLSHHLGR ALQLTNILRD IDDDAAINRC YLPRELLARE GIAITDPATI VRDPALPRVC ATLVERALEH FRQADAVMDT CPRAQVKAPR IMSGAYRCIL EAAIARGFAA PRAPLRKPKA RMLMIAARYA LF
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