| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_4288 |
|---|
| Symbol | |
|---|
| ID | 6127116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 1242466 |
|---|
| End bp | 1243869 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641651391 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001777924 |
|---|
| Protein GI | 170736664 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.22095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.428638 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCTGG CCTCGGCCGC GCTGGCCGCG TGTTCGGTCG GCGAGCCGTA CCGGCCGCCG
GTGTCCGACG CAACGCGCAC CGGGCCGTTC GACGCGGTGG CCGACGTGCC GGCCGCGGCG
GCCGGCGAAC CGCCGCAACG CTGGTGGCGC CTCTACGACG ATCCCGTGCT CGACGGTCTC
GTGCGCGATG CGCTCGCGCA GAACCGCGAT CTCGCGGCGG CCGTCGCGCG GGTCGAGCGT
GCGCGCGCCG TGTTCGACGA GGCCGGCGCC GCGCGGCTGC CCGACACGAC GGCCGGCTTC
GGCGTCGACT ACGGCAAGCA CGCGCCCGAC CAGATCGTCG CGGCGGCCAA GGACACCGAT
GCGCGGACGC GCTGGGGTTT CGCGCCGTCG TTCTCGCTGT CGTGGGAAGT CGATCTGTGG
GGCCGCGTGC GCCATCTGGT CGACGCCGCG CAGGCCGACG CCGACGCGGT GCAGGCCGCG
TCCGATGCGA TGCGCGTCGT GGTGGCCGCC GAGACGACGG CCGCGTATGC GCAGGTGTGC
GCGTATGGCG AGCGGATCGA CGTGGCCGAG CAGTCGGTCG GCATCGCGGA CCGGCTGGCC
GCGCTGACGG CGAAGCAGCG CGCGCACGGT CTCGTGTCCG ACCTCGAAGT GGCGCGCTCG
CGCGCGTTCG CCGACGACAC GCGCGCCGAT TTGCCGGCGC TCGTCGGCTC ACGGCGCGCG
GCGCTGTACG AACTCGCGGT GCTGACCGGG CGCGCGCCCG GCGCGCTGCC CGACGCCGCC
GCGCATTGCC GCACCGCGCC CGTGCTGGCG CGGCCGTTCC CGGTCGGCGA CGGCGCGTCG
CTGCTGCGCC GCCGCCCCGA CCTGCGCGAG AGCGAGCGCC AGCTGGCCGC CGCGAATGCG
CGGATCGGCG TGGCGACGGC CGAGCTGTAT CCGTCGATTT CGCTCGGCGG CTCGGTGAAC
TGGCTGTCGA CCGGCGGCGA TCCGTCGACG CTCGGCGACA AGTACGCGAT CGCCTGGGGC
GTCGGCCCGC TGATCACGTG GCGCTTTCCG AACATGGCGG CGAGCCGCGC GCGGCTTGCG
CAGGCCCGCG CCGACGACAC GCTCGCCCGT GCGCAATTCG ATGCGCAGGT GCTGCGCGCG
CTGAAGGAAA CCGAGCAGGC GCTGGCCCGC TACGGCGCCG CGTGGCGCCG CCGCGCCGCG
CTCGAAACCG CCCGCGCCGA GCATGCGCGC GCCTATCGCC TCGCCGAGCT GAACTACGAA
GCCGGCGCCC TCGATTTCCT CGGCGTGCTC GACGCACAGC GCAGCCTCGT CGCGGTCGAT
TCGGCGCTGG CCGAGTCGAC GCAGCAGGTC TCGCTCGACC AGGTCGCCGT GTTCAAGGCG
CTCGGAGGCG GCTGGCAACC GTAG
|
|---|
| Protein sequence | MLLASAALAA CSVGEPYRPP VSDATRTGPF DAVADVPAAA AGEPPQRWWR LYDDPVLDGL
VRDALAQNRD LAAAVARVER ARAVFDEAGA ARLPDTTAGF GVDYGKHAPD QIVAAAKDTD
ARTRWGFAPS FSLSWEVDLW GRVRHLVDAA QADADAVQAA SDAMRVVVAA ETTAAYAQVC
AYGERIDVAE QSVGIADRLA ALTAKQRAHG LVSDLEVARS RAFADDTRAD LPALVGSRRA
ALYELAVLTG RAPGALPDAA AHCRTAPVLA RPFPVGDGAS LLRRRPDLRE SERQLAAANA
RIGVATAELY PSISLGGSVN WLSTGGDPST LGDKYAIAWG VGPLITWRFP NMAASRARLA
QARADDTLAR AQFDAQVLRA LKETEQALAR YGAAWRRRAA LETARAEHAR AYRLAELNYE
AGALDFLGVL DAQRSLVAVD SALAESTQQV SLDQVAVFKA LGGGWQP
|
|---|
| |