Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_4258 |
Symbol | |
ID | 6127088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | - |
Start bp | 1213385 |
End bp | 1214419 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641651363 |
Product | porin |
Protein accession | YP_001777896 |
Protein GI | 170736636 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0937831 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000204948 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGGAAGA TAGTTTGGGG CTTGGCGCGC GCTTGCGCTG TTTCGGTTGG GATGTGGAGC ATCCCGGGCG TCGTCCACGC CCAGTCTTCG GTATCGCTTT ACGGTTTGAT CGACGCCTTT GTTGGCGAAA CGCATGCGCC AGGCGCAGCC GGCAGTGCCT GGCAGGTAGG CTCAGGCGGG ATGACGACGT CATATTGGGG CGTGTCGGGA TCGGAAGATC TTGGCCACGG CATGAAGGCG GTGTTCACGC TGGAGAGCTT TTTCAGAGTC AACGCTGGTC AGCTCGGCTC ATTCAATGGT CAGTCATTCT TCGGTCGCAA TGCCTTTGTC GGACTGAGCG GACGCTTTGG GGAGGTGACG GTCGGGCGCA ATACGGCACC CCTGTTCGTC TCCACGTTAC TCTTCAATCC ATTCGGTAAC TCGTTCGCGT TTTCGCCGAT GATCTCACAC GGTTATCTGG GCTCGGCCAT GGGGGCGGCT TCCGTGCAAA GCGATACGGC GATCGACAGT TCGGTGTTGT ATCAGACACC GGAGATTGGA GGGCTTTCTG GAAGCCTGCT CTATAGCAAT GCGGGTGTGG CCGGCCACAC TGGGCAGGCG AACTATAGTG CCAACGTGCT TTACTTCGCC GGTGCGTTTT CGGCAACGGC CGCAGTGCAA AGTCTGCACA CAGCGTCGCT TTTTCTGAAT GGTGCGACGG CACAAACGGC ATGGCTTGTC GGCGGTGCCT ATCGGATCCA CGCAACGAAG CTCATGTTCC AGTACGAGCG GGTGAGCGAC AATAGCAACG TGACCGACGA CACCGTGCAG GTGGGAGCAA GCGCGCGATT CGGAATGGGC AGTATGCTGC TGTCGTGGGC GGGCACGCGG CGGCGTCCTG TCACCGGTTC CGGCATCCGA TGGTCGACGT TCGCGCTGGG CTACGACTAC CCACTGTCGA AGCGCACTGA CATCTATGCG GCATGGCGCT ATGACACGAT TACGCATGCC TCATCAGGAA ATGGCATCGG AGCCGGGGTG CGGATGCGGT TTTGA
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Protein sequence | MRKIVWGLAR ACAVSVGMWS IPGVVHAQSS VSLYGLIDAF VGETHAPGAA GSAWQVGSGG MTTSYWGVSG SEDLGHGMKA VFTLESFFRV NAGQLGSFNG QSFFGRNAFV GLSGRFGEVT VGRNTAPLFV STLLFNPFGN SFAFSPMISH GYLGSAMGAA SVQSDTAIDS SVLYQTPEIG GLSGSLLYSN AGVAGHTGQA NYSANVLYFA GAFSATAAVQ SLHTASLFLN GATAQTAWLV GGAYRIHATK LMFQYERVSD NSNVTDDTVQ VGASARFGMG SMLLSWAGTR RRPVTGSGIR WSTFALGYDY PLSKRTDIYA AWRYDTITHA SSGNGIGAGV RMRF
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